View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2958_high_1 (Length: 798)

Name: NF2958_high_1
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2958_high_1
NF2958_high_1
[»] chr6 (4 HSPs)
chr6 (8-508)||(20602858-20603358)
chr6 (28-296)||(34763428-34763696)
chr6 (708-773)||(31142182-31142247)
chr6 (669-751)||(10067743-10067825)
[»] chr2 (9 HSPs)
chr2 (309-508)||(18144249-18144450)
chr2 (43-296)||(29218383-29218637)
chr2 (43-296)||(29331682-29331936)
chr2 (43-125)||(22994646-22994728)
chr2 (669-751)||(1517542-1517624)
chr2 (287-319)||(18144470-18144502)
chr2 (689-773)||(40124286-40124370)
chr2 (695-773)||(17604257-17604334)
chr2 (690-732)||(18903210-18903252)
[»] chr3 (5 HSPs)
chr3 (511-663)||(25817266-25817420)
chr3 (43-155)||(493588-493700)
chr3 (748-784)||(25817417-25817453)
chr3 (702-739)||(1183251-1183288)
chr3 (719-772)||(47944335-47944388)
[»] chr8 (6 HSPs)
chr8 (38-297)||(2308638-2308897)
chr8 (38-297)||(2313832-2314091)
chr8 (31-291)||(25818367-25818630)
chr8 (689-743)||(10029003-10029057)
chr8 (31-125)||(25892785-25892879)
chr8 (698-751)||(21215929-21215982)
[»] chr1 (8 HSPs)
chr1 (28-296)||(29457361-29457629)
chr1 (43-155)||(8320208-8320320)
chr1 (38-95)||(24645876-24645933)
chr1 (689-773)||(19464237-19464321)
chr1 (706-778)||(39162445-39162517)
chr1 (706-757)||(30519077-30519128)
chr1 (695-738)||(50155810-50155853)
chr1 (689-739)||(35684923-35684973)
[»] scaffold1235 (1 HSPs)
scaffold1235 (43-155)||(2070-2182)
[»] chr5 (3 HSPs)
chr5 (43-155)||(29736568-29736680)
chr5 (689-773)||(29714684-29714768)
chr5 (695-773)||(14468798-14468875)
[»] chr4 (8 HSPs)
chr4 (43-155)||(28402581-28402693)
chr4 (688-773)||(23716564-23716649)
chr4 (706-769)||(971884-971947)
chr4 (706-773)||(51226107-51226174)
chr4 (689-773)||(4161644-4161728)
chr4 (706-773)||(46804794-46804861)
chr4 (695-773)||(12034410-12034488)
chr4 (706-751)||(12922205-12922250)
[»] chr7 (5 HSPs)
chr7 (705-773)||(5358245-5358313)
chr7 (689-772)||(20889419-20889502)
chr7 (697-739)||(3400169-3400211)
chr7 (689-778)||(14239758-14239847)
chr7 (669-778)||(40355065-40355174)
[»] scaffold0003 (1 HSPs)
scaffold0003 (704-749)||(328802-328847)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 508
Target Start/End: Original strand, 20602858 - 20603358
Alignment:
Q  8 agttgaaactccctatgattaggaaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||    
T  20602858 agttgaaactccctatgattaggaaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaacctagttatgcatgctcggtccaggca 20602957  T
Q  108 tatagaaatagatgttcactacgtacgtgatcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaacc 207  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||| ||||| |||||||    
T  20602958 tatagaaatagatgttgactacatacgtgatcaagtacttcaaaataaaatcactatatcctatgttcccacaactgatcaaattgtagattctttaacc 20603057  T
Q  208 aaacctctcacgcatacaaggttcaacatttttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagttagagaaagttgtgattc 307  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  20603058 aaacctctcacgcatacaaggttcaacatttttagtcacaaacttggggtgactatgtcaccattagtttaagagggggagttagagaaagttgtgattc 20603157  T
Q  308 taataattatgaccttatgtgcctagcaatagtcaacacatgtgtgcagctaacatgattagttcttaccatttatattcattctacaattattgtaatt 407  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  20603158 taataattatgacctgatgtgcctagcattagtcaacacatgtgtacaactaacataattagttcttgccatttatattcattctacaattattgtaatt 20603257  T
Q  408 ataactgtcttaattataggatctcaattgtactgcaatatgtgtatataatcacattatgtaaaatgaatatatacaacatttttacagcatttctttc 507  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||| |||| ||||||| ||||||||||    
T  20603258 ataaatgtcttaattataggatctcaattgtactacaatatgtgtatataagcacattatgtaaaaggaatacatataacacttttacaccatttctttc 20603357  T
Q  508 t 508  Q
    |    
T  20603358 t 20603358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 28 - 296
Target Start/End: Complemental strand, 34763696 - 34763428
Alignment:
Q  28 aggaaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcact 127  Q
    ||||| ||||| ||||||||||||||| ||||||| |||||||| ||||| |||||  ||||||||||| ||||||| || || ||||||||||||||||    
T  34763696 aggaagccaatattgtggtgtgataacttgagtgctaaggcacttgcatcaaatcctattatgcatgctaggtccaaacacattgaaatagatgttcact 34763597  T
Q  128 acgtacgtgatcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaag 227  Q
     | || | |||||||||||  ||  | |||||||  |  || |||| || || ||||| || |||||||| ||  |||| ||| | ||||| ||  ||||    
T  34763596 tcataagagatcaagtactgaaaggtcaaatcacagtggcctatgtaccaactgcagaccagattgcagactgcctaactaaatcactcactcactcaag 34763497  T
Q  228 gttcaacatttttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagttagagaa 296  Q
     |||||| |  | || ||||||||||| |||||| | |||||||||||||||| ||| || ||||||||    
T  34763496 attcaacttcctaagggacaaacttggagtgactccatcaccatcagtttgagggggagaattagagaa 34763428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 773
Target Start/End: Complemental strand, 31142247 - 31142182
Alignment:
Q  708 aatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||||| || ||| |||| |||||||||||| ||||||||||  ||||||| |||||||||||||    
T  31142247 aatagtcttttaatatatcaaaatttcaaaatagtctttgattctacactctgttagtcaaaatag 31142182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 751
Target Start/End: Complemental strand, 10067825 - 10067743
Alignment:
Q  669 atagtcattttcatctttcgatgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattg 751  Q
    |||||||||||  |||||  ||||| ||| |||| | |||||||||  ||||||||||||||||| ||||| |||| ||||||    
T  10067825 atagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattg 10067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 309 - 508
Target Start/End: Complemental strand, 18144450 - 18144249
Alignment:
Q  309 aataattatgaccttatgtgcctagcaatagtcaacacatgtgtgcagctaacatgattagttcttaccatttatattcattctacaattattgtaatta 408  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| | | |||||  |||||||||||||| ||||||||||||| |||||||||||||||    
T  18144450 aataattatgaacttatgtgcctagcaatagtcaatacatgtgtaccgataacagaattagttcttaccaattatattcattctgcaattattgtaatta 18144351  T
Q  409 taactgtcttaattataggatctcaattgtactgcaatatgtgta--tataatcacattatgtaaaatgaatatatacaacatttttacagcatttcttt 506  Q
    ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  18144350 taattgtcttaattataggatctcaattgtactgcaatatgtgtatatataatcacattatgtaaaatgaatatacacaacattttaacagcatttcttt 18144251  T
Q  507 ct 508  Q
    ||    
T  18144250 ct 18144249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 29218637 - 29218383
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| | ||||||||||||||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| |||||| |  | |||||||    
T  29218637 tggtgtgataacttaagtgccaaggcactagcttcaaatccagtcatgcatgctcgatcaaagcatattgaaattgatgtgcactacatcagagatcaag 29218538  T
Q  143 tacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaaggttcaacatttttag 242  Q
    |||| ||| |||| |||| | || |  |||| ||  |||| ||||||||| |  | ||| | || ||  |  | || |||||  | ||||||    ||||    
T  29218537 tactacaagataagatcattgtagcatatgtcccatcagctgatcaaattactaactgtctcactaaggccttgactcatactcgtttcaaccaacttag 29218438  T
Q  243 agacaaacttggggtgactacgtca-ccatcagtttgagagggggagttagagaa 296  Q
    ||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||    
T  29218437 agacaaacttgggttgactccttcacccatcagtttgagagggggagttagagaa 29218383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 43 - 296
Target Start/End: Complemental strand, 29331936 - 29331682
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| | ||||||||||||||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| |||||| |  | |||||||    
T  29331936 tggtgtgataacttaagtgccaaggcactagcttcaaatccagtcatgcatgctcgatcaaagcatattgaaattgatgtgcactacatcagagatcaag 29331837  T
Q  143 tacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaaggttcaacatttttag 242  Q
    |||| ||| |||| |||| | || |  |||| ||  |||| ||||||||| |  | ||| | || ||  |  | || |||||  | ||||||    ||||    
T  29331836 tactacaagataagatcattgtagcatatgtcccatcagctgatcaaattactaactgtctcactaaggccttgactcatactcgtttcaaccaacttag 29331737  T
Q  243 agacaaacttggggtgactacgtca-ccatcagtttgagagggggagttagagaa 296  Q
    ||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||    
T  29331736 agacaaacttgggttgactccttcacccatcagtttgagagggggagttagagaa 29331682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 22994646 - 22994728
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttca 125  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| ||||||||    
T  22994646 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttca 22994728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 751
Target Start/End: Original strand, 1517542 - 1517624
Alignment:
Q  669 atagtcattttcatctttcgatgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattg 751  Q
    ||||||||||| || | | |||||| ||||| ||| ||| |||||| |||||||||||||||||| ||||| |||||||||||    
T  1517542 atagtcattttgatatctggatgtgtaacgaatagttacgatagtccttcaatgtatcgaaattttaaaatagtctttgattg 1517624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 18144502 - 18144470
Alignment:
Q  287 agttagagaaagttgtgattctaataattatga 319  Q
    |||||||||||||||||||||||||||||||||    
T  18144502 agttagagaaagttgtgattctaataattatga 18144470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 773
Target Start/End: Original strand, 40124286 - 40124370
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||| |||||||||  |||||||||  | ||||||||||||||| ||||| |||| ||||||  |||||  |||||||||||||    
T  40124286 atgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatag 40124370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 773
Target Start/End: Original strand, 17604257 - 17604334
Alignment:
Q  695 aacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    |||||||||  |||||||| | ||||| |||| |||||||||||| ||| |||||||  |||||| |||||||||||||    
T  17604257 aacgagtagtcacaatagttactcaatttatcaaaatttcaaaatagtcattgattg-tcactctattagtcaaaatag 17604334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 690 - 732
Target Start/End: Complemental strand, 18903252 - 18903210
Alignment:
Q  690 tgtgcaacgagtagctacaatagtcattcaatgtatcgaaatt 732  Q
    |||| |||||||||  |||||||||||||||||||||||||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaatt 18903210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 5e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 511 - 663
Target Start/End: Original strand, 25817266 - 25817420
Alignment:
Q  511 cttgctatattacccttttattatacacattttactagataataaaagatacaacttttat--tagaatttaaattaaattgagaagttggatagcttcg 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  25817266 cttgctatattacccttttattatacacattttactagataataaaagatacaacttttattctagaatttaaattaaattgagaagttggatagcttcg 25817365  T
Q  609 tgctgttgattggaatttgattttannnnnnnctctctgtcttgtaaacttattg 663  Q
    ||||||||||||||||| |||||||        ||||||||||||||||||||||    
T  25817366 tgctgttgattggaattcgattttatttttttatctctgtcttgtaaacttattg 25817420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 493588 - 493700
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| |||||||| ||| |  | || ||||    
T  493588 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttcattacatcagagaccaag 493687  T
Q  143 tacttcaaaataa 155  Q
    |||| ||||||||    
T  493688 tactacaaaataa 493700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 748 - 784
Target Start/End: Original strand, 25817417 - 25817453
Alignment:
Q  748 attgcacactcttttagtcaaaatagccattgatgat 784  Q
    |||||||||||||||||||||||||||||||||||||    
T  25817417 attgcacactcttttagtcaaaatagccattgatgat 25817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 739
Target Start/End: Complemental strand, 1183288 - 1183251
Alignment:
Q  702 agctacaatagtcattcaatgtatcgaaatttcaaaat 739  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1183288 agctacaatagtcattcaatgtaccgaaatttcaaaat 1183251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 47944335 - 47944388
Alignment:
Q  719 aatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaata 772  Q
    ||||||||||||||| ||||| |||||||||||  |||| | ||||||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 2308638 - 2308897
Alignment:
Q  38 ttttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtga 137  Q
    ||||||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||  |||| || || || || ||||| ||||||||| |||||||    
T  2308638 ttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccaggtctaaacacattgagatagacgttcactacatacgtga 2308737  T
Q  138 tcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaaggttcaacatt 237  Q
    ||| || ||||||||| || || |  |  |  |||| ||  | ||||||||||||||||| ||  |||||||| ||||||| || || |||||||||||     
T  2308738 tcaggtccttcaaaatgaagtcgcagttgcttatgttccttctgcagatcaaattgcagactgcctaaccaaagctctcactcacactaggttcaacatc 2308837  T
Q  238 tttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagttagagaaa 297  Q
    || || ||||||||||| || ||   |||||||||||||||||| ||||||||| |||||    
T  2308838 ttgagggacaaacttggagtaacagagtcaccatcagtttgagaaggggagttaaagaaa 2308897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 38 - 297
Target Start/End: Original strand, 2313832 - 2314091
Alignment:
Q  38 ttttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtga 137  Q
    ||||||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||  |||| || || || || ||||| ||||||||| |||||||    
T  2313832 ttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccaggtctaaacacattgagatagacgttcactacatacgtga 2313931  T
Q  138 tcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaaggttcaacatt 237  Q
    ||| || ||||||||| || || |  |  |  |||| ||  | ||||||||||||||||| ||  |||||||| ||||||| || || |||||||||||     
T  2313932 tcaggtccttcaaaatgaagtcgcagttgcttatgttccttctgcagatcaaattgcagactgcctaaccaaagctctcactcacactaggttcaacatc 2314031  T
Q  238 tttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagttagagaaa 297  Q
    || || ||||||||||| || ||   |||||||||||||||||| ||||||||| |||||    
T  2314032 ttgagggacaaacttggagtaacagagtcaccatcagtttgagaaggggagttaaagaaa 2314091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 31 - 291
Target Start/End: Original strand, 25818367 - 25818630
Alignment:
Q  31 aaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaa---gcatatagaaatagatgttcact 127  Q
    |||||||||||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| |||||    || || ||||| ||||| || |    
T  25818367 aaaccaattttgtggtgtgataacttaagtgctaaggcacttgcatccaatccggttatgcatgctcgttccaaattacacattgaaattgatgtgcatt 25818466  T
Q  128 acgtacgtgatcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaag 227  Q
    | ||| | |||||||| || ||| |||||||||| ||| |  |||| || ||||| || ||||| |||||||| || || ||| | ||||| ||| ||||    
T  25818467 atgtaagagatcaagtgctacaagataaaatcacaatagcttatgttcctacagctgaccaaatcgcagattgcttgactaaatccctcactcattcaag 25818566  T
Q  228 gttcaacatttttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagtta 291  Q
     |||||  |||| |||||||||||||| |||||| | |||||| ||||||||| ||| ||||||    
T  25818567 attcaattttttaagagacaaacttggagtgactccctcaccaccagtttgagggggagagtta 25818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 689 - 743
Target Start/End: Complemental strand, 10029057 - 10029003
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtc 743  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  10029057 atgtgcaacgagtagttacaatagtcattcaatgtatcaaaattttaaaattgtc 10029003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 25892879 - 25892785
Alignment:
Q  31 aaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttca 125  Q
    ||||||||  |||||||||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| | ||| || || ||||| ||||||||    
T  25892879 aaaccaatcatgtggtgtgataacttaagtgctaaggcacttgcatccaatccggttatgcatgctcgtttcaaacacattgaaattgatgttca 25892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 698 - 751
Target Start/End: Original strand, 21215929 - 21215982
Alignment:
Q  698 gagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattg 751  Q
    ||||||| ||||||||| |||||||||| ||||||||||||| ||| |||||||    
T  21215929 gagtagccacaatagtccttcaatgtattgaaatttcaaaatagtcattgattg 21215982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 9e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 28 - 296
Target Start/End: Complemental strand, 29457629 - 29457361
Alignment:
Q  28 aggaaaccaattttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcact 127  Q
    ||||| ||||| ||||||||||||||| ||||||| |||||||| ||||| |||||  ||||||||||| ||||||| || || ||||||||||||||||    
T  29457629 aggaagccaatattgtggtgtgataacttgagtgctaaggcacttgcatcaaatcctattatgcatgctaggtccaaacacattgaaatagatgttcact 29457530  T
Q  128 acgtacgtgatcaagtacttcaaaataaaatcactatatccaatgtgcccacagcagatcaaattgcagattgtttaaccaaacctctcacgcatacaag 227  Q
     | || | |||||||||||  ||  | |||||||  |  || |||| || || ||||| || |||||||| ||  |||| ||| | ||||| ||  ||||    
T  29457529 tcataagagatcaagtactgaaaggtcaaatcacagtggcctatgtaccaactgcagaccagattgcagactgcctaactaaatcactcactcactcaag 29457430  T
Q  228 gttcaacatttttagagacaaacttggggtgactacgtcaccatcagtttgagagggggagttagagaa 296  Q
     |||||| |  | || ||||||||||| |||||| | |||||||||||||||| ||| || ||||||||    
T  29457429 attcaacttcctaagggacaaacttggagtgactccatcaccatcagtttgagggggagaattagagaa 29457361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 8320320 - 8320208
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| |||||||| ||| |  | || ||||    
T  8320320 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttcattacatcagagaccaag 8320221  T
Q  143 tacttcaaaataa 155  Q
    |||| ||||||||    
T  8320220 tactacaaaataa 8320208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 24645933 - 24645876
Alignment:
Q  38 ttttgtggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgc 95  Q
    ||||||||||||||||| ||||||| ||||||||||| || ||||| |||||||||||    
T  24645933 ttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 24645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 773
Target Start/End: Original strand, 19464237 - 19464321
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||| ||| |||||  ||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||||  |||||||||||||    
T  19464237 atgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctgattgaacactccgttagtcaaaatag 19464321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 778
Target Start/End: Original strand, 39162445 - 39162517
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatagccatt 778  Q
    ||||||||  |||||||||| ||||||||||||| || ||||||||| || | | ||||||||||||| ||||    
T  39162445 acaatagtacttcaatgtattgaaatttcaaaatagtttttgattgcgcattatgttagtcaaaatagtcatt 39162517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 757
Target Start/End: Original strand, 30519077 - 30519128
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacact 757  Q
    ||||||||| || ||||||||||||||||||||| |||| |||||| |||||    
T  30519077 acaatagtccttaaatgtatcgaaatttcaaaatagtctctgattgtacact 30519128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 738
Target Start/End: Complemental strand, 50155853 - 50155810
Alignment:
Q  695 aacgagtagctacaatagtcattcaatgtatcgaaatttcaaaa 738  Q
    |||||||||| ||||||||||||||||||||| || ||||||||    
T  50155853 aacgagtagccacaatagtcattcaatgtatcaaactttcaaaa 50155810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 689 - 739
Target Start/End: Complemental strand, 35684973 - 35684923
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaat 739  Q
    |||||||| |||||| |||||||||| ||||||||||| |||| |||||||    
T  35684973 atgtgcaatgagtagttacaatagtccttcaatgtatcaaaatctcaaaat 35684923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 2070 - 2182
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| |||||||| ||| |  | || ||||    
T  2070 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttcattacatcagagaccaag 2169  T
Q  143 tacttcaaaataa 155  Q
    |||| ||||||||    
T  2170 tactacaaaataa 2182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 29736680 - 29736568
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| |||||||| ||| |  | || ||||    
T  29736680 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttcattacatcagagaccaag 29736581  T
Q  143 tacttcaaaataa 155  Q
    |||| ||||||||    
T  29736580 tactacaaaataa 29736568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 689 - 773
Target Start/End: Complemental strand, 29714768 - 29714684
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcat-tcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||| ||| ||||| |||||||||| | |||||||||||||||||||||||||||| || ||||||||  || ||||||||||||    
T  29714768 atgtgtaaccagtagttacaatagtcttatcaatgtatcgaaatttcaaaattgtctctgcttgcacac-attgtagtcaaaatag 29714684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 773
Target Start/End: Original strand, 14468798 - 14468875
Alignment:
Q  695 aacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||| || ||||  |||| | ||| |||||||||    
T  14468798 aacgaatagctacaatagtcat-caatgtatcgaaatttcaaaatagtccttaattgtgcactatgttaatcaaaatag 14468875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 28402581 - 28402693
Alignment:
Q  43 tggtgtgataacctgagtgccaaggcactagcatcgaatccagttatgcatgctcggtccaagcatatagaaatagatgttcactacgtacgtgatcaag 142  Q
    |||||||||||| ||||||||||||||||||| || ||||||||  |||||||||| || |||||||| ||||| |||||||| ||| |  | || ||||    
T  28402581 tggtgtgataacttgagtgccaaggcactagcttctaatccagtattgcatgctcgttctaagcatattgaaattgatgttcattacatcagagaccaag 28402680  T
Q  143 tacttcaaaataa 155  Q
    |||| ||||||||    
T  28402681 tactacaaaataa 28402693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 688 - 773
Target Start/End: Original strand, 23716564 - 23716649
Alignment:
Q  688 gatgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    |||||| || |||||| ||||||| ||||||||| ||||||||||| ||||| || ||||||||| |||||| ||||| |||||||    
T  23716564 gatgtgtaatgagtagatacaatattcattcaatttatcgaaattttaaaatagtttttgattgcgcactctgttagttaaaatag 23716649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 769
Target Start/End: Original strand, 971884 - 971947
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaa 769  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||  |||| | |||||||||    
T  971884 acaatagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaa 971947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 773
Target Start/End: Complemental strand, 51226174 - 51226107
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||||||| |||||||||||||||||  ||||||||  |||||||  |||||| |||||||||||||    
T  51226174 acaatagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcactctgttagtcaaaatag 51226107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 773
Target Start/End: Original strand, 4161644 - 4161728
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    ||||| || ||||||  ||||||||| ||||||||||| |||||||||||| ||| ||||||  ||| ||| || ||||||||||    
T  4161644 atgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtccttgattatacattctgttggtcaaaatag 4161728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 773
Target Start/End: Original strand, 46804794 - 46804861
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    |||||||||  |||||||||| |||||| ||||| |||| |||||| ||||| | |||||||||||||    
T  46804794 acaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatag 46804861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 773
Target Start/End: Original strand, 12034410 - 12034488
Alignment:
Q  695 aacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    |||||||||  |||||||||  |||||||||| ||||| |||||| |||| |||||| | ||| | |||||||||||||    
T  12034410 aacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgttagtcaaaatag 12034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 751
Target Start/End: Original strand, 12922205 - 12922250
Alignment:
Q  706 acaatagtcattcaatgtatcgaaatttcaaaattgtctttgattg 751  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||    
T  12922205 acaatagtatttcaatgtatcgaaatttcaaaatagtttttgattg 12922250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 773
Target Start/End: Original strand, 5358245 - 5358313
Alignment:
Q  705 tacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatag 773  Q
    |||||||||| ||||||||||| |||||| ||||| |||| ||||||   ||||| |||||||||||||    
T  5358245 tacaatagtccttcaatgtatcaaaattttaaaatagtctctgattgtgtactctattagtcaaaatag 5358313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 772
Target Start/End: Complemental strand, 20889502 - 20889419
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaata 772  Q
    ||||| ||| |||||| |||||||||  |||||||||| | ||||||||||  ||| |||||||| ||| | ||||||||||||    
T  20889502 atgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaataatctctgattgcatactttattagtcaaaata 20889419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 697 - 739
Target Start/End: Complemental strand, 3400211 - 3400169
Alignment:
Q  697 cgagtagctacaatagtcattcaatgtatcgaaatttcaaaat 739  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  3400211 cgagtagccacaatagtccttcaatgtattgaaatttcaaaat 3400169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 778
Target Start/End: Original strand, 14239758 - 14239847
Alignment:
Q  689 atgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaaaatagccatt 778  Q
    ||||| ||| |||||  |||||||||| | ||||||||||||||| |||||| || || |||| ||| | | ||||||||||||| ||||    
T  14239758 atgtgtaacaagtaggcacaatagtcacttaatgtatcgaaatttaaaaattatccttaattgtacaatatattagtcaaaatagtcatt 14239847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 778
Target Start/End: Complemental strand, 40355174 - 40355065
Alignment:
Q  669 atagtcattttcatctttcgatgtgcaacgagtagctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgattgcacactcttttagtcaa 768  Q
    |||||||||||  |||||  ||||| ||||||||| |  ||||||| |||||  || |||||||| ||||| |||| ||||||  |||| | ||||||||    
T  40355174 atagtcattttggtctttgaatgtgtaacgagtagttgtaatagtcgttcaacataccgaaatttgaaaatagtctctgattgtgcactatgttagtcaa 40355075  T
Q  769 aatagccatt 778  Q
    ||||| ||||    
T  40355074 aatagtcatt 40355065  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 749
Target Start/End: Original strand, 328802 - 328847
Alignment:
Q  704 ctacaatagtcattcaatgtatcgaaatttcaaaattgtctttgat 749  Q
    ||||||||||| |||||||||||||||||| |||||  ||||||||    
T  328802 ctacaatagtctttcaatgtatcgaaattttaaaataatctttgat 328847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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