View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_high_3 (Length: 334)
Name: NF2958_high_3
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_high_3 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 24064322 - 24063987
Alignment:
| Q |
1 |
acaactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggtta |
100 |
Q |
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| T |
24064322 |
acaactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggtta |
24064223 |
T |
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| Q |
101 |
gtatagtccttgaattcttaaaattggagtaaattaccaatttaatcattgaaattataggattgtgtgatttaatccctaaaattgataatca---tca |
197 |
Q |
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| T |
24064222 |
gtatagtccttgaattcttaaaattggagtaaattaccaatttaatcattgaaattataggattgagtgatttaatccctaaaattgataatcatcatca |
24064123 |
T |
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| Q |
198 |
ttcacatcaattatttgagttcaaatcttggtgaaacaatctttgaatcaccaaagcttcatttctttaagaacaaaagttttaagacaaaaaacaaaag |
297 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
24064122 |
ttcacatcaattctttgagttcaaatcttggtgaaacaatctttgaatcaccaaagcttcattcctttaagaacaaaaggtttaagacaaaaaacaaaag |
24064023 |
T |
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| Q |
298 |
agaactcattaagggttggtctggtggtgttgacttg |
334 |
Q |
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| T |
24064022 |
agaactcact-agggttggtttgatggtgttgacttg |
24063987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24016839 - 24016737
Alignment:
| Q |
1 |
acaactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggtta |
100 |
Q |
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| T |
24016839 |
acaactgctatgagcctttttgctttctgttattgtgctcatgcactgatgcccacaatatgcaattccatgaatgacagaaagcagttttctaaggtaa |
24016740 |
T |
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| Q |
101 |
gta |
103 |
Q |
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||| |
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| T |
24016739 |
gta |
24016737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 24074776 - 24074680
Alignment:
| Q |
2 |
caactgctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggt |
98 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||| || ||||||||| ||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
24074776 |
caactgcaatgagcctttttgctttcagttactgtgctcatggattaatgccaacattatctaattccatgaatgatagaaagcagttttcaaaggt |
24074680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 23246151 - 23246061
Alignment:
| Q |
8 |
ctatgagcctttttgctttctgttactgtgctcatgctttgatgccaacaatatgcaattctatgaatgatagaaagcagttttccaaggt |
98 |
Q |
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||||||||||||||||||| |||||| || |||||| || | || |||||| ||||||| |||| ||| ||||| || ||||||||||| |
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| T |
23246151 |
ctatgagcctttttgctttttgttacaatgttcatgcattacttcccacaatacgcaattccatgagtgaaagaaaacaattttccaaggt |
23246061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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