View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_high_6 (Length: 250)
Name: NF2958_high_6
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35748587 - 35748826
Alignment:
| Q |
1 |
ttcaggtgcaatttctgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaa |
100 |
Q |
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| T |
35748587 |
ttcaggtgcaatttttgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaa |
35748686 |
T |
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| Q |
101 |
gggaaatatccatacaccggctttcttgattgcgctgtcaaaacctacaaagcaggaggaattttgaaattttacactggattccctctctattgtgtca |
200 |
Q |
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| T |
35748687 |
gggaaatatccatacaccggctttcttgattgcgctgtcaaaacctacaaagcaggaggaattttgaaattttacactggattccctctctattgtgtca |
35748786 |
T |
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| Q |
201 |
ggatttctattggtgtcatggtattattcttttacctttg |
240 |
Q |
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| T |
35748787 |
ggatttctattggtgtcatggtattattcttttacctttg |
35748826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 35729169 - 35729342
Alignment:
| Q |
32 |
gcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaagggaaatatccatacaccggctttcttgatt |
131 |
Q |
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| T |
35729169 |
gcagcagcttgcagtttgccatttgattatgtgaagacacagattcagaagatgcaacctgatgctgaaggaaaatacccatacactggttctcttgact |
35729268 |
T |
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| Q |
132 |
gcgctgtcaaaacctacaaagcaggaggaattttgaaattttacactggattccctctctattgtgtcaggatt |
205 |
Q |
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| T |
35729269 |
gtgccgtcaaaaccttcaaagcaggaggacccttcaaattttacactggattccctgtctactgtgttaggatt |
35729342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 35858260 - 35858051
Alignment:
| Q |
31 |
tgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaagggaaatatccatacaccggctttcttgat |
130 |
Q |
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|||||||| |||| |||||||| ||||||||||||||||| | ||| |||| ||||||||||||| ||||||||||||||||||| |||| | |||| |
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| T |
35858260 |
tgcagctgtttgctgtttaccatttgaatatgtgatgattgaaattaagaagatgcaacctgatgacaaagggaaatatccatacactggctatgttgac |
35858161 |
T |
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| Q |
131 |
tgcgctgtcaaaacctacaaagcaggaggaattttgaaattttacactggattccctctctattgtgtcaggatttctattggtgtcatggtattattct |
230 |
Q |
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| T |
35858160 |
tgtgctgtcaaaactctcatagcaggaggacctttgaagttttacactggattctccgtctattgtgccaggatttttccttgtgtcacggtatttttct |
35858061 |
T |
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| Q |
231 |
tttacctttg |
240 |
Q |
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||| |||||| |
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| T |
35858060 |
tttgcctttg |
35858051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 35853712 - 35853503
Alignment:
| Q |
1 |
ttcaggtgcaatttctgtatctattatttatgcagctgcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaa |
100 |
Q |
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|||||||||||||| ||| ||| | ||| ||||||||||| ||||||||| ||||||||||||| ||||| ||| | || ||||||||||| |||||| |
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| T |
35853712 |
ttcaggtgcaatttttgtgtctggtgtttccgcagctgcttgtagtttaccatttgaatatgtgataattcaaattaacaagatgcaacctgacgctgaa |
35853613 |
T |
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| Q |
101 |
gggaaatatccatacaccggctttcttgattgcgctgtcaaaacctacaaag-----caggaggaattttgaaattttacactggattccctctctattg |
195 |
Q |
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| T |
35853612 |
gggaaatatccatacactagctttcttgactgtgctgtcgaaacatttaaggcaggacaggaggacctttgaagttttacactggattccctatctattg |
35853513 |
T |
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| Q |
196 |
tgtcaggatt |
205 |
Q |
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| T |
35853512 |
tgccaggatt |
35853503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 35759996 - 35759926
Alignment:
| Q |
90 |
ctgatgctgaagggaaatatccatacaccggctttcttgattgcgctgtcaaaacctacaaagcaggagga |
160 |
Q |
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| T |
35759996 |
ctgatgctgaaggaaaatatccatacaccggctatcttgactgtgctgtcaaaaccttccaagcaggagga |
35759926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 35760034 - 35759997
Alignment:
| Q |
31 |
tgcagctgcttgcagtttaccagttgaatatgtgatga |
68 |
Q |
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| T |
35760034 |
tgcagcagcttgcagttttccagttgaatatgtgatga |
35759997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 35755142 - 35755066
Alignment:
| Q |
38 |
gcttgcagtttaccagttgaatatgtgatgattcagattcagaatatgcaacctgatgctgaagggaaatatccata |
114 |
Q |
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| T |
35755142 |
gcttgcagtttttcatctgagtatgtgatgactcatattcagaagatgaaacctcgtgctgaaggaaaatatccata |
35755066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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