View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_low_13 (Length: 237)
Name: NF2958_low_13
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_13 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3685 - 3465
Alignment:
| Q |
1 |
gagttactaatatttagtagtaatgtttaattaatcatgatgggatttgcattgttttagtttaaaattattatagtgttattatttgatttcattgaaa |
100 |
Q |
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| T |
3685 |
gagttactaatatttagtagtaatgtttaattaatcatgatggtatttgcattgttttagtttaaaattattatagtgttattatttgatttcattgaaa |
3586 |
T |
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| Q |
101 |
cgcttgtctgcaaacaattaagtagttacaattgcttttaaattttcttgatgatataaattagttctaaaatgttgctttagcttgaggtagacattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585 |
cgcttgtctgcaaacaattaagtagttacaattgcttttaaattttcttgatgatataaattagttctaaaatgttgctttagcttgaggtagacattta |
3486 |
T |
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| Q |
201 |
tgaggttatggatgattgaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3485 |
tgaggttatggatgattgaac |
3465 |
T |
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