View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_low_14 (Length: 226)
Name: NF2958_low_14
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48873227 - 48872999
Alignment:
| Q |
1 |
cctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaagnnnnnnnnn----ttgaatcaaaatgagcttta |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
48873227 |
cctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaagaaagaaaaaaaaatcgaatcaaaatgagcttta |
48873128 |
T |
|
| Q |
97 |
ttccaattcccttctttttccgacactctcaaattcaccttagttgttgaatttccacactcttgaccatccacaaccccacccttccatcctttgacaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48873127 |
ttccaattcccttctttttccgacactctcaaattcaccttcgttgttgaatttccacactcttgaccatctacaaccccacccttccatcctttgacaa |
48873028 |
T |
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| Q |
197 |
ttttcttgcctctaattttcaatttgatg |
225 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
48873027 |
ttttcttgcctctaattttcaattggatg |
48872999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48878531 - 48878303
Alignment:
| Q |
1 |
cctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaagnnnnnnnnn----ttgaatcaaaatgagcttta |
96 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
48878531 |
cctgcttcaatataaattaaaattttaaaatcaactgaatccaatagctaggtttcatattgaaaagaaagaaaaaaaaatcgaatcaaaatgagcttta |
48878432 |
T |
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| Q |
97 |
ttccaattcccttctttttccgacactctcaaattcaccttagttgttgaatttccacactcttgaccatccacaaccccacccttccatcctttgacaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48878431 |
ttccaattcccttctttttccgacactctcaaattcaccttcgttgttgaatttccacactcttgaccatctacaaccccacccttccatcctttgacaa |
48878332 |
T |
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| Q |
197 |
ttttcttgcctctaattttcaatttgatg |
225 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
48878331 |
ttttcttgcctctaattttcaattggatg |
48878303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 48866003 - 48865947
Alignment:
| Q |
162 |
accatccacaaccccacccttccatcctttgacaattttcttgcctctaattttcaa |
218 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
48866003 |
accatccacaaccccacccttccatccttggacaaatttcttgcctctaattttcaa |
48865947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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