View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_low_2 (Length: 695)
Name: NF2958_low_2
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 4289592 - 4290187
Alignment:
| Q |
1 |
aatccctgaagctaaagctcagttgattgtggctaaatctgcgaaattggactgtaatccctttagggaaaggnnnnnnngaattcaagttcaattctat |
100 |
Q |
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| T |
4289592 |
aatcgctgaagctgaagctcaattgattgtggctaaatatgcaaaattggactgtaatccctttagggaaagttttttttgaattcaagttcaattttgt |
4289691 |
T |
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| Q |
101 |
ggaggatacgaggaggattttggggttcggggtgatgaatttgaagcctaggatattgtaattcttttgctggactaggaattttacgcctcaaactcag |
200 |
Q |
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| T |
4289692 |
ggaggatatgaggaggattttggcgttcggggtgatgaattttaagcatgggatattgcaattctttcgctggactagggattttacgcctcaaactcag |
4289791 |
T |
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| Q |
201 |
gtacaatctcatgttcaaatttgggtgcgtttattgcatttgccacaataatattggagaaggaaaaccctatatgagattgcatcaggtcttggaacac |
300 |
Q |
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| T |
4289792 |
gcacaatctcatgctcaaatttgggtgcgtttattgcatttgccacaataatattggagaaggaaaaccctatatgagattgcatcaggtcttggaacac |
4289891 |
T |
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| Q |
301 |
cctttagcatagatgaagctacttaaaataggaggtttggattatatgctagagttcttgtagatgtggatttatctgagaagatatttgactctgtgat |
400 |
Q |
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| T |
4289892 |
cctttaccatagatgaagctacagaaaataggaggtttggattatatgctagagttctagtagatgtggatttgtctaagaagctatttgattatgtaat |
4289991 |
T |
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| Q |
401 |
ggtggaaagagagggacatgccttcccagtatcagttcaatttaaaaggcaaccccaatattgtgctcattgtaaattgttgggacataatatataaaat |
500 |
Q |
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| T |
4289992 |
ggtggaaagagaaggacatgccttccctgtatcagttcaatttgaaaggaaaccccaatattgtgctcattgtaaattgttgggacatagtatacaaaac |
4290091 |
T |
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| Q |
501 |
tgcatgaatattggt-----tatactaatcagaaggaaggttttgagactatctctaagaaaggtaatgctggaattcagacaactaagaacaaag |
591 |
Q |
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| T |
4290092 |
tgcatgaaaattggttatactatactaatcagaaggaaggttttgagactatctctaagaaaggtaatgctggaattcagaaaactaagaacaaag |
4290187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 4290196 - 4290254
Alignment:
| Q |
621 |
agagaaagtttttgataatgaggttgtttcagttgtggatagaaatttgatgaaggaag |
679 |
Q |
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| T |
4290196 |
agagaaagtttttgataatgaggttgtttcaattgtggatagaaatttgatgaaggaag |
4290254 |
T |
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