View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2958_low_4 (Length: 363)
Name: NF2958_low_4
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 208 - 348
Target Start/End: Complemental strand, 47562171 - 47562031
Alignment:
| Q |
208 |
acatttgcatttgttgatgcaggggcagatgggttgaggttagacaatttgtctgcccgagtcaattgtttattacgtgtaaggtaaatgacctatctga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562171 |
acatttgcatttgttgatgcaggggcagatgggttgaggttagacaatttgtctgcccgagtcaattgtttattacgtgtaaggtaaatgacctatctga |
47562072 |
T |
|
| Q |
308 |
taaattatatttgttctatacttttaagtttatgtggtttc |
348 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47562071 |
taaattatatatgttctatacttttaagtttatgtggtttc |
47562031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 47562360 - 47562236
Alignment:
| Q |
19 |
ctttaagcattagaaataaaatcaagagaaaaataatttattttagtgaattcatctaagtcaagacattgctagagaatttttgtgcaattggattacg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562360 |
ctttaagcattagaaataaaatcaagagaaatttttttttttttagtgaattcatctaagtcaagacattgctagagaatttttgtgcaattggattacg |
47562261 |
T |
|
| Q |
119 |
aattgttcaatgaaaagtcatcaac |
143 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47562260 |
aattgttcaatgaaaagtcatcaac |
47562236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University