View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_low_6 (Length: 321)
Name: NF2958_low_6
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 37444325 - 37444033
Alignment:
| Q |
1 |
aagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcagcgaggg |
100 |
Q |
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| T |
37444325 |
aagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcagtgaggg |
37444226 |
T |
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| Q |
101 |
tttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgag |
200 |
Q |
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| T |
37444225 |
tttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgag |
37444126 |
T |
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| Q |
201 |
tgaaaccaattttgaaccaaaattataagctatttttggaaagcttactgaaataagtagaaaatgtatcaatatgtgtgtatttgaacactaaaaagcg |
300 |
Q |
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| T |
37444125 |
tgaaaccaattttgaaccaaaattataagctatttttggaaagcttac------------------tatcaatatgtgtgtatttgaacactaaaaagcg |
37444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 124 - 277
Target Start/End: Original strand, 7492522 - 7492676
Alignment:
| Q |
124 |
acattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaaccaaaat |
223 |
Q |
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|||||||||| |||| | || |||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||| |||| |
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| T |
7492522 |
acattgacttggctaagatagctgttgttaaaaggaggattgagtgagcaatggtgcaaaagagaggata----gaatgaaaccaattttgaacctaaat |
7492617 |
T |
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| Q |
224 |
tataagcta-----tttttggaaagcttactgaaataagtagaaaatgtatcaatatgt |
277 |
Q |
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|||| |||| |||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
7492618 |
tataggctagtagtattttggaaagcttattgaattaagtagaaaaattatcaatatgt |
7492676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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