View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2958_low_8 (Length: 254)
Name: NF2958_low_8
Description: NF2958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2958_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 34817966 - 34818207
Alignment:
| Q |
1 |
caaatttgtcgtagctgtaccaaggaactgtggcctagatggttcgcagaaaaccgaattccatccgttacaatgcaagataaatccagtcaggaaatct |
100 |
Q |
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| T |
34817966 |
caaatttgtcgtagctgtaccaaggaactgtggcctagatggttcgcagaaaaccgaattccatccgttacaatgcaagataaatccagtcaggaaatct |
34818065 |
T |
|
| Q |
101 |
tctactacactatcgtataagaaacctacctgaaacagttcaaaattatacatttgagtttttctgtataaattttgatgtaataatatctgagttttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34818066 |
tctactacactatcgtataagaaacctacctgaaacagttcaaaattataca-ttgagtttttctgtataaattttgatgtaataatatctgagttttga |
34818164 |
T |
|
| Q |
201 |
agaagtctacttacatcttgtccccatttagtgccagtttcat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34818165 |
agaagtctacttacatcttgtccccatttagtgccagtttcat |
34818207 |
T |
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