View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2960_high_1 (Length: 558)

Name: NF2960_high_1
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2960_high_1
NF2960_high_1
[»] chr7 (35 HSPs)
chr7 (16-548)||(22069313-22069851)
chr7 (16-548)||(22062853-22063382)
chr7 (127-544)||(22080169-22080592)
chr7 (223-548)||(22088002-22088333)
chr7 (16-139)||(22087813-22087936)
chr7 (19-145)||(22080037-22080163)
chr7 (419-541)||(20351712-20351834)
chr7 (167-244)||(6865428-6865505)
chr7 (419-541)||(20133648-20133770)
chr7 (171-236)||(20338293-20338358)
chr7 (429-544)||(661016-661131)
chr7 (198-298)||(20375080-20375180)
chr7 (173-244)||(20141449-20141520)
chr7 (342-379)||(661187-661224)
chr7 (341-390)||(20338457-20338506)
chr7 (342-390)||(20126626-20126674)
chr7 (27-82)||(6865587-6865642)
chr7 (173-244)||(20133948-20134018)
chr7 (351-390)||(20374991-20375030)
chr7 (419-472)||(20360777-20360830)
chr7 (419-532)||(20374843-20374956)
chr7 (341-390)||(22520776-22520825)
chr7 (227-295)||(661262-661330)
chr7 (342-386)||(6865292-6865336)
chr7 (423-467)||(12820321-12820365)
chr7 (428-468)||(13417350-13417390)
chr7 (423-467)||(19326396-19326440)
chr7 (342-390)||(19357429-19357477)
chr7 (423-467)||(19721618-19721662)
chr7 (196-244)||(20126769-20126817)
chr7 (346-386)||(20351633-20351673)
chr7 (198-254)||(20361824-20361880)
chr7 (429-469)||(22039823-22039863)
chr7 (270-298)||(24035156-24035184)
chr7 (415-463)||(26236425-26236473)
[»] chr1 (1 HSPs)
chr1 (172-298)||(15960577-15960703)
[»] chr6 (4 HSPs)
chr6 (34-100)||(6948685-6948751)
chr6 (423-468)||(6935640-6935685)
chr6 (427-468)||(6954953-6954994)
chr6 (423-468)||(24254845-24254890)
[»] chr4 (1 HSPs)
chr4 (429-466)||(10460204-10460241)
[»] chr5 (1 HSPs)
chr5 (354-390)||(29641902-29641938)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 22069313 - 22069851
Alignment:
Q  16 tcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctccttcgccaaactgcaccttaacagaactacacaaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  22069313 tcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatctgaaccctccttcgccaaattgcaccttaatagaactacacaaga 22069412  T
Q  116 tgcagtccgcacaattgtatcatacaatatatattccatgacttgcactgacgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatc 215  Q
    ||||||| |||||||||||||| ||||||| ||||||| |||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  22069413 tgcagtcagcacaattgtatcaaacaatatctattccaggactggcacggaaatgtccttcacagttttccgtttgctcgagaaccctccaatcattatc 22069512  T
Q  216 aatcttccaagagatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttgcttatt---cggaactgggt 312  Q
    ||||||||||||||||||||||||| |||| | ||||||| || ||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |    
T  22069513 aatcttccaagagatccttactatccactgaacgacaaggctttccgctacatagttggttcctgcaatggattgctttgcttatttggcggaactggct 22069612  T
Q  313 gtaga----acagaagggggatatagagagaaatggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagattgtgatgatggcctag 408  Q
     ||||    ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||    
T  22069613 atagagaggaca-atggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatttcatggtgatgatggcctag 22069711  T
Q  409 gttccccttttaatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagttt 508  Q
    ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||    
T  22069712 gtttcccttgtaattacacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagttt 22069811  T
Q  509 gggcgttaatgtttggagaaatatccaagattcccctatg 548  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22069812 gggcgttaatgtttggagaaatatccaagattcccatatg 22069851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 548
Target Start/End: Original strand, 22062853 - 22063382
Alignment:
Q  16 tcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctccttcgccaaactgcaccttaacagaactacacaaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22062853 tcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatctgaaccctccttcgccaaactgcaccttaacagaactacacaaga 22062952  T
Q  116 tgcagtccgcacaattgtatcatacaatatatattccatgacttgcactgacgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatc 215  Q
    ||||||||||||||||||||||||| ||||  |||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22062953 tgcagtccgcacaattgtatcataccatatgcattccagg---------gacgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatc 22063043  T
Q  216 aatcttccaagagatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttgcttatt---cggaactgggt 312  Q
    |||||||||| | |||||||| |||||||| | ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||   ||||||||| |    
T  22063044 aatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactacatcgttggttcctgcaatggattgctttgcttatttggcggaactggct 22063143  T
Q  313 gtaga----acagaagggggatatagagagaaatggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagattgtgatgatggcctag 408  Q
     ||||    ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||    
T  22063144 atagagaggaca-atggggggtatagagagaattggcttcgtttttggaacccagccacaaggataatatcagaaaaatttcatggtgatgatggcctag 22063242  T
Q  409 gttccccttttaatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagttt 508  Q
    ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||    
T  22063243 gtttcccttgtaattacacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactcgaaagacaacaaatgtaagagtttttagttt 22063342  T
Q  509 gggcgttaatgtttggagaaatatccaagattcccctatg 548  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22063343 gggcgttaatgtttggagaaatatccaagattcccctatg 22063382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 127 - 544
Target Start/End: Original strand, 22080169 - 22080592
Alignment:
Q  127 caattgtatcatacaatatatattccatgacttgcactgacgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaag 226  Q
    |||||||||||  |||||| | ||||| || |||||  | |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||     
T  22080169 caattgtatcacgcaatatgtcttccacgaattgcatggtcgtgaccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaa 22080268  T
Q  227 agatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttgcttatt---cggaactgggtgtagaacagaa 323  Q
    | |||||||||||| |||  |||| ||||| |||  | |||| ||||||||||| ||||||||||||||||||||   |||||||||   ||||   ||     
T  22080269 atatccttactatcgactcaaggaaaaggactgcttccacattgttggttcctgcaatggattgctttgcttatttggcggaactggcaatagagaggac 22080368  T
Q  324 ---gggggatatagagagaaatggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagattgtgatgatggcctaggttcccctttta 420  Q
       ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  22080369 actggggggtatagagagaattggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagatggtgatgatggcctaggtttccctttta 22080468  T
Q  421 atttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgttaatgt 520  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||| |||   |||||    
T  22080469 acttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaaaacaacaaacgtaagagttttcagtttaggcaacaatgt 22080568  T
Q  521 ttggagaaatatccaagattcccc 544  Q
    ||||||| |||| ||| |||||||    
T  22080569 ttggagagatattcaaaattcccc 22080592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 223 - 548
Target Start/End: Original strand, 22088002 - 22088333
Alignment:
Q  223 caagagatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttgcttattcgg---aactgggtgtagaac 319  Q
    |||||||||||||||||||||||  |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||   || || || |||| |    
T  22088002 caagagatccttactatcaactgacggacaaggattgccgctacatcattggttcctgcaatggattgctttgcttattcggcggaagtgagtatagagc 22088101  T
Q  320 aga---agggggatatagagagaaatggcttcgtttttggaacccagccacaaggacaatatcagaaaaattagattgtgatgatggcctaggttcccct 416  Q
     ||   ||| || ||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| || ||||    
T  22088102 ggacgaaggagggtatagagagaaatgaattcgtgtttggaacccggccacaaggacaatatcagaaaaattagatttggatgatggcctagatttccct 22088201  T
Q  417 tttaatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgtta 516  Q
    |   |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||    
T  22088202 tcgcatttcaagtttggttatgataattcaacagaaacttataaggtggtgtatttcactccagagacaacaaatgtaagagtttttagtttgggcgtta 22088301  T
Q  517 atgtttggagaaatatccaagattcccctatg 548  Q
    ||||||||||||||||||||||||||||||||    
T  22088302 atgtttggagaaatatccaagattcccctatg 22088333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 22087813 - 22087936
Alignment:
Q  16 tcaaatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctccttcgccaaactgcaccttaacagaactacacaaga 115  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |    
T  22087813 tcaaatctctcatgcggctgaagtgtttgagtaagtcatggaagtacctcatgtccgaaccctacttcgccaaattgcaccttaacagaactacacaaaa 22087912  T
Q  116 tgcagtccgcacaattgtatcata 139  Q
    ||||||||||| | ||||||||||    
T  22087913 tgcagtccgcagatttgtatcata 22087936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 22080037 - 22080163
Alignment:
Q  19 aatctctcatgcggctgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctccttcgccaaactgcaccttaacagaactacacaagatgc 118  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||    
T  22080037 aatctctcatacggctgaagtgtgtgagtaaatcatggaagtacctcatatccgaaccctccttcgtcaaattgcaccttaagagaactaaacaagatgc 22080136  T
Q  119 agtccgcacaattgtatcatacaatat 145  Q
    |||||||| | ||||||||||||||||    
T  22080137 agtccgcaaatttgtatcatacaatat 22080163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 541
Target Start/End: Original strand, 20351712 - 20351834
Alignment:
Q  419 taatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgttaat 518  Q
    |||||| ||||||||||| | ||||||||| || ||||||||||||| ||||||   |||||| ||||  |||||    |||||||||||||||| ||||    
T  20351712 taatttgacgtttggttacgttaattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgggcgataat 20351811  T
Q  519 gtttggagaaatatccaagattc 541  Q
    |||||||||||||| ||| ||||    
T  20351812 gtttggagaaatattcaaaattc 20351834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 6865505 - 6865428
Alignment:
Q  167 cgtgtccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 244  Q
    |||||||||||| ||| | |||||||| ||| |||||||||||||||||||||||||  |||||||||| ||||||||    
T  6865505 cgtgtccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatccttattatcaact 6865428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 541
Target Start/End: Complemental strand, 20133770 - 20133648
Alignment:
Q  419 taatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgttaat 518  Q
    |||||| | |||||| |||| ||||||||| || ||||| ||||| ||||||||   |||||| |||||||||||||  ||||| ||||| |||| ||||    
T  20133770 taatttgaagtttggctatgttaattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataat 20133671  T
Q  519 gtttggagaaatatccaagattc 541  Q
     ||||||||| ||| ||||||||    
T  20133670 atttggagaactattcaagattc 20133648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 20338293 - 20338358
Alignment:
Q  171 tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac 236  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||  ||||||||||    
T  20338293 tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac 20338358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 429 - 544
Target Start/End: Complemental strand, 661131 - 661016
Alignment:
Q  429 tttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgttaatgtttggagaa 528  Q
    ||||||||||||| |||||| || | ||||||||||||||| |||  |||  | |||||||| |||| | |||| | ||| |||| ||||||||||||||    
T  661131 tttggttatgatagttcaaccgacatttataaggtggtgtacttccttccggagacaacaaacgtaagaattttcaatttaggcgataatgtttggagaa 661032  T
Q  529 atatccaagattcccc 544  Q
    |||| ||| |||||||    
T  661031 atattcaaaattcccc 661016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 20375180 - 20375080
Alignment:
Q  198 aaccctccaatcattatcaatcttccaagagatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttgct 297  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||| || |||||  |  ||| | |||||||||| || || |||||||| || ||||    
T  20375180 aaccctccaatcattttcaatcttccagaagatccttactatcaacttgatgacaaacacggcctcgacatagttggctcttgcaatggattactctgct 20375081  T
Q  298 t 298  Q
    |    
T  20375080 t 20375080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 20141520 - 20141449
Alignment:
Q  173 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 244  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| |||  ||||||| || |||||||    
T  20141520 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatcaact 20141449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 661224 - 661187
Alignment:
Q  342 tggcttcgtttttggaacccagccacaaggacaatatc 379  Q
    |||||||||||||||||||| |||||||||||||||||    
T  661224 tggcttcgtttttggaacccggccacaaggacaatatc 661187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 20338457 - 20338506
Alignment:
Q  341 atggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||    
T  20338457 atggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaattag 20338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 20126674 - 20126626
Alignment:
Q  342 tggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||||||||||| ||||||||| || ||||||| ||||||||||    
T  20126674 tggcttcgtttttggaatccagccacatgggcaatatctgaaaaattag 20126626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 6865642 - 6865587
Alignment:
Q  27 atgcggctgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctcctt 82  Q
    ||||| ||||||| |||||| ||||||||||||| |||||| ||||||||| ||||    
T  6865642 atgcgactgaagtatgtgagtaagtcatggaagtccctcatctccgaacccacctt 6865587  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 20134018 - 20133948
Alignment:
Q  173 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaact 244  Q
    |||||| ||||| ||||||||| ||||||||||||||| || ||||||||||  ||||||| || |||||||    
T  20134018 cttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccagaagatcctaaccatcaact 20133948  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 20375030 - 20374991
Alignment:
Q  351 ttttggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  20375030 ttttggaacccagccacgaggacaatatctgaaaaattag 20374991  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Original strand, 20360777 - 20360830
Alignment:
Q  419 taatttcacgtttggttatgataattcaacagaaacttataaggtggtgtattt 472  Q
    |||||| |||||||||| || |||||||||  | ||||||||||||||||||||    
T  20360777 taatttgacgtttggttttgttaattcaaccaacacttataaggtggtgtattt 20360830  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 532
Target Start/End: Complemental strand, 20374956 - 20374843
Alignment:
Q  419 taatttcacgtttggttatgataattcaacagaaacttataaggtggtgtatttcactccaaacacaacaaatgtaacagttttaagtttgggcgttaat 518  Q
    |||||| |||||| |||||| ||| ||||| || ||||||||||||| ||||||   |||||| ||||  ||||||   ||||| ||| | |||| ||||    
T  20374956 taatttgacgttttgttatgttaactcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtatgtgtttttagtattggcgataat 20374857  T
Q  519 gtttggagaaatat 532  Q
    |||||| |||||||    
T  20374856 gtttggcgaaatat 20374843  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 22520825 - 22520776
Alignment:
Q  341 atggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||  |||||||||||| |||||||||||| ||| ||||||||||    
T  22520825 atggcttcagttttggaacccatccacaaggacaagatctgaaaaattag 22520776  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 661330 - 661262
Alignment:
Q  227 agatccttactatcaactggaggacaaggattgccgctacatagttggttcctgtaatggattgctttg 295  Q
    |||||||||||||||||| |  |||||  |||||||| | || |||||||| || ||||||||||||||    
T  661330 agatccttactatcaacttgctgacaaatattgccgccatattgttggttcttgcaatggattgctttg 661262  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 6865336 - 6865292
Alignment:
Q  342 tggcttcgtttttggaacccagccacaaggacaatatcagaaaaa 386  Q
    ||||||||||||||||||||||||| ||||| | |||| ||||||    
T  6865336 tggcttcgtttttggaacccagccataaggaaattatcggaaaaa 6865292  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 12820365 - 12820321
Alignment:
Q  423 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 467  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||    
T  12820365 ttcacatttggttatgataattcaactgacacttacaaggtggtg 12820321  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 13417390 - 13417350
Alignment:
Q  428 gtttggttatgataattcaacagaaacttataaggtggtgt 468  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  13417390 gtttggttatgataattcaacggacacttacaaggtggtgt 13417350  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 19326440 - 19326396
Alignment:
Q  423 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 467  Q
    ||||| ||||| |||||||||||||| | ||||||||||||||||    
T  19326440 ttcacatttgggtatgataattcaactggaacttataaggtggtg 19326396  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 19357429 - 19357477
Alignment:
Q  342 tggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||||||||||||||||| |||| |||| |||| || |||||||    
T  19357429 tggcttcgtttttggaacccagctacaaagacattatctgagaaattag 19357477  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 19721618 - 19721662
Alignment:
Q  423 ttcacgtttggttatgataattcaacagaaacttataaggtggtg 467  Q
    ||||| ||||||||||||| ||||||  |||||||||||||||||    
T  19721618 ttcacatttggttatgatatttcaactaaaacttataaggtggtg 19721662  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 20126817 - 20126769
Alignment:
Q  196 agaaccctccaatcattatcaatcttccaagagatccttactatcaact 244  Q
    ||||||||||| ||||| ||||||||||||  ||||| |||||||||||    
T  20126817 agaaccctccattcattttcaatcttccaaaggatccatactatcaact 20126769  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 20351633 - 20351673
Alignment:
Q  346 ttcgtttttggaacccagccacaaggacaatatcagaaaaa 386  Q
    |||| |||||||||| |||||||||||||||||| ||||||    
T  20351633 ttcgcttttggaaccaagccacaaggacaatatctgaaaaa 20351673  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 20361880 - 20361824
Alignment:
Q  198 aaccctccaatcattatcaatcttccaagagatccttactatcaactggaggacaag 254  Q
    ||||||||||| ||| ||||||||| ||  |||||||||||| |||| |||||||||    
T  20361880 aaccctccaataattttcaatcttcaaaaggatccttactatgaacttgaggacaag 20361824  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 469
Target Start/End: Original strand, 22039823 - 22039863
Alignment:
Q  429 tttggttatgataattcaacagaaacttataaggtggtgta 469  Q
    ||||| ||||||||||||||||| ||||||||||| |||||    
T  22039823 tttggatatgataattcaacagatacttataaggtagtgta 22039863  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 24035156 - 24035184
Alignment:
Q  270 gttggttcctgtaatggattgctttgctt 298  Q
    |||||||||||||||||||||||||||||    
T  24035156 gttggttcctgtaatggattgctttgctt 24035184  T

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Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 26236425 - 26236473
Alignment:
Q  415 cttttaatttcacgtttggttatgataattcaacagaaacttataaggt 463  Q
    ||||||| ||| |||||||||||||| |||||||| ||||||| |||||    
T  26236425 cttttaagttctcgtttggttatgatgattcaacaaaaacttacaaggt 26236473  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 298
Target Start/End: Original strand, 15960577 - 15960703
Alignment:
Q  172 ccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttactatcaactggaggacaaggattgccgctacatagt 271  Q
    ||||||||||||| ||||||||||| ||||||||||||||| | |||||||| | ||||||||| |||||| |  | |||||||||||   ||| || ||    
T  15960577 ccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgt 15960676  T
Q  272 tggttcctgtaatggattgctttgctt 298  Q
    |||||| || |||||||||||||||||    
T  15960677 tggttcttgcaatggattgctttgctt 15960703  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 6948751 - 6948685
Alignment:
Q  34 tgaagtgtgtgagcaagtcatggaagtacctcatatccgaaccctccttcgccaaactgcaccttaa 100  Q
    ||||||||||  |||||||||||||   ||| |||||||| |||| |||||||||| ||||||||||    
T  6948751 tgaagtgtgtttgcaagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaa 6948685  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 6935685 - 6935640
Alignment:
Q  423 ttcacgtttggttatgataattcaacagaaacttataaggtggtgt 468  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||    
T  6935685 ttcacttttggttatgataattcaacagacacttacaagttggtgt 6935640  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 468
Target Start/End: Complemental strand, 6954994 - 6954953
Alignment:
Q  427 cgtttggttatgataattcaacagaaacttataaggtggtgt 468  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||    
T  6954994 cgtttggttatgataattcaacagacacttacaagatggtgt 6954953  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 24254890 - 24254845
Alignment:
Q  423 ttcacgtttggttatgataattcaacagaaacttataaggtggtgt 468  Q
    ||||| ||||| |||||||||||||| | |||||||||||||||||    
T  24254890 ttcacatttgggtatgataattcaactggaacttataaggtggtgt 24254845  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Original strand, 10460204 - 10460241
Alignment:
Q  429 tttggttatgataattcaacagaaacttataaggtggt 466  Q
    ||||||||||||||||| || |||||||||||||||||    
T  10460204 tttggttatgataattcgactgaaacttataaggtggt 10460241  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 29641902 - 29641938
Alignment:
Q  354 tggaacccagccacaaggacaatatcagaaaaattag 390  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  29641902 tggaacccagccacaaggataatatcggaaaaattag 29641938  T

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