View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_high_15 (Length: 253)
Name: NF2960_high_15
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_high_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 39943192 - 39943063
Alignment:
| Q |
124 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcagttgcttttatactgtatagtttataatccaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39943192 |
cagcaatattttctaaaaagttgctaactcatcatcctatcaccataattgagaacatagaggtttcggttgcttttatactgtatagtttataatccaa |
39943093 |
T |
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| Q |
224 |
atgcatcctttgttaattccttttttaatt |
253 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39943092 |
atgcatcctttgttaattccttttttaatt |
39943063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 39943313 - 39943258
Alignment:
| Q |
3 |
atcatcccaacccccacataggtagcagaaaaatcaaaggagaacctgttatgtac |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39943313 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
39943258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 28739635 - 28739690
Alignment:
| Q |
3 |
atcatcccaacccccacataggtagcagaaaaatcaaaggagaacctgttatgtac |
58 |
Q |
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| T |
28739635 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28739690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 28749577 - 28749632
Alignment:
| Q |
3 |
atcatcccaacccccacataggtagcagaaaaatcaaaggagaacctgttatgtac |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28749577 |
atcatcccaacccccacataggtagcagaaaaatcaaagtagaacctgttatgtac |
28749632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 28739754 - 28739860
Alignment:
| Q |
125 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
216 |
Q |
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||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28739754 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28739853 |
T |
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| Q |
217 |
aatccaa |
223 |
Q |
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||||||| |
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| T |
28739854 |
aatccaa |
28739860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 28749696 - 28749802
Alignment:
| Q |
125 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
216 |
Q |
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|
||||||||| |||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
28749696 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattgagaacatagaggtttcagttttggtcaacttttatattgtatagtttat |
28749795 |
T |
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| Q |
217 |
aatccaa |
223 |
Q |
| |
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||||||| |
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|
| T |
28749796 |
aatccaa |
28749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 28753590 - 28753645
Alignment:
| Q |
3 |
atcatcccaacccccacataggtagcagaaaaatcaaaggagaacctgttatgtac |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
28753590 |
atcatcccaacccccacataggtagcagaaaaatcaaagtaaaacctgttatgtac |
28753645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 28753709 - 28753815
Alignment:
| Q |
125 |
agcaatattttctaaaaa-gttgctaactcatcatcctatcaccataattgagaacatagaggtttcagtt-------gcttttatactgtatagtttat |
216 |
Q |
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||||||||| |||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |
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| T |
28753709 |
agcaatattatctaaaaaagttggcaactcatcatgctatcaccataattaagaacatagaggtttcagtttcggtcagcttttatattgtgtagtttat |
28753808 |
T |
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| Q |
217 |
aatccaa |
223 |
Q |
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||||||| |
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|
| T |
28753809 |
aatccaa |
28753815 |
T |
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