View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_high_17 (Length: 250)
Name: NF2960_high_17
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 51729993 - 51729754
Alignment:
| Q |
11 |
cacagatacatggtaatgttgtgcacaatatttttaccagggcactcattcactagcatagaaacacaccttgatttatcttataaatagtatcattgtg |
110 |
Q |
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| T |
51729993 |
cacacatacatggtaatgttgtgcacaatatttttaccagggcactcattcactagcatagaaacacaccttgatttatcttataaatagtatcattgtg |
51729894 |
T |
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| Q |
111 |
tttatccttgtcaaatttctacatagacacttgaaagtgtcaaaatacaatttaagcaaaacccatgttcaacaacaaaaatagttgcaacaattgaatt |
210 |
Q |
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| T |
51729893 |
tttatccttgtaaaatttctacatagacacttgaaagtgtcaaaatacaatttaagcaaaacccatgttcaacaacaaaaatagttgcaacaattgaatt |
51729794 |
T |
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| Q |
211 |
gagaaaatgaatttcaatgacttgactctcactatcatct |
250 |
Q |
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| T |
51729793 |
gagaaaatgaatttcaatgacttgactctcactttcatct |
51729754 |
T |
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