View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2960_high_18 (Length: 248)

Name: NF2960_high_18
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2960_high_18
NF2960_high_18
[»] chr5 (14 HSPs)
chr5 (1-235)||(8644697-8644931)
chr5 (147-235)||(8637352-8637440)
chr5 (145-188)||(8536027-8536070)
chr5 (145-235)||(2856424-2856514)
chr5 (145-185)||(8529466-8529506)
chr5 (152-188)||(11354043-11354079)
chr5 (152-188)||(11373314-11373350)
chr5 (145-188)||(1599837-1599880)
chr5 (145-188)||(2844597-2844640)
chr5 (145-188)||(2904540-2904583)
chr5 (43-90)||(8536113-8536160)
chr5 (145-235)||(2874034-2874124)
chr5 (147-185)||(9074277-9074315)
chr5 (43-103)||(1599747-1599807)
[»] chr7 (4 HSPs)
chr7 (145-188)||(35780339-35780382)
chr7 (145-188)||(48361389-48361432)
chr7 (46-106)||(35780424-35780484)
chr7 (46-102)||(48361302-48361358)
[»] chr4 (1 HSPs)
chr4 (145-185)||(9443627-9443667)
[»] chr6 (1 HSPs)
chr6 (145-198)||(16716886-16716939)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 8644931 - 8644697
Alignment:
Q  1 tgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttataagacttcctaaagctactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644931 tgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggagtttataagacttcctaaagctactg 8644832  T
Q  101 cgactcttatccacaatgacatagtggataaggtatcaggtattgctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttggga 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8644831 cgaatcttatccacaatgacatagtggataaggtatcaggtattgctgcttttggcttccaacctaaaactaatgaatataaggtgatgtatatttggga 8644732  T
Q  201 cagatatgttagacgaggcaatggctgggtgtttg 235  Q
    || ||||||||||||||||||||||||||||||||    
T  8644731 caaatatgttagacgaggcaatggctgggtgtttg 8644697  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 8637440 - 8637352
Alignment:
Q  147 tggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttg 235  Q
    ||||||||| ||||||||||||||||||||||||||||||||    || |||| |||  |||||| |||||||||| | ||||||||||    
T  8637440 tggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgtttg 8637352  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 8536070 - 8536027
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  8536070 gctggttttggtttccaacctaaaactaatgaatataaggtgat 8536027  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 2856424 - 2856514
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttg 235  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    || ||| ||| |||||||||||||| |||| | | ||||||||    
T  2856424 gctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgagacaatcgtttggtgtttg 2856514  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 8529506 - 8529466
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggt 185  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  8529506 gctggttttggattccaacctaaaactaatgaatataaggt 8529466  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 11354043 - 11354079
Alignment:
Q  152 ttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  11354043 ttggcttccaacctaaaactaatgaatataaggtgat 11354079  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 11373350 - 11373314
Alignment:
Q  152 ttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    |||||||||||||||||||||||||||||||||||||    
T  11373350 ttggcttccaacctaaaactaatgaatataaggtgat 11373314  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 1599837 - 1599880
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  1599837 gctgcttttggtttccaacctaaaactaatgaatataaggtgat 1599880  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 2844597 - 2844640
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  2844597 gctggttttggtttccaacccaaaactaatgaatataaggtgat 2844640  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 2904540 - 2904583
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  2904540 gctggttttggtttccaacccaaaactaatgaatataaggtgat 2904583  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 8536160 - 8536113
Alignment:
Q  43 ccattagtaatttgcaatccagtcactggggagtttataagacttcct 90  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||    
T  8536160 ccattagtgatctgcaacccagtcactggggagtttataagacttcct 8536113  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 2874034 - 2874124
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgggacagatatgttagacgaggcaatggctgggtgtttg 235  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    || ||| ||| |||||||||||||| |||| | | ||||||||    
T  2874034 gctggttttagtttccaacccaaaactaatgaatataaggtgatcataatatggaacaaatatgttagacgagacaatcgtttggtgtttg 2874124  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 9074277 - 9074315
Alignment:
Q  147 tggttttggcttccaacctaaaactaatgaatataaggt 185  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  9074277 tggttttggattccaacctaatactaatgaatataaggt 9074315  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 1599747 - 1599807
Alignment:
Q  43 ccattagtaatttgcaatccagtcactggggagtttataagacttcctaaagctactgcga 103  Q
    |||||||| || ||||| ||| ||||||||||||| |||||||||||| || |||| ||||    
T  1599747 ccattagtgatctgcaacccaatcactggggagttcataagacttcctgaatctaccgcga 1599807  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 35780382 - 35780339
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  35780382 gctggttttggtttccaacctaaaactaatgaatataaggtgat 35780339  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 48361389 - 48361432
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgat 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  48361389 gctggttttggtttccaacctaaaactaatgaatataaggtgat 48361432  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 35780484 - 35780424
Alignment:
Q  46 ttagtaatttgcaatccagtcactggggagtttataagacttcctaaagctactgcgactc 106  Q
    ||||| |||||||| |||||||| |||||||| |||||||||||| |||||||| ||||||    
T  35780484 ttagtgatttgcaacccagtcacgggggagttcataagacttcctgaagctactacgactc 35780424  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 48361302 - 48361358
Alignment:
Q  46 ttagtaatttgcaatccagtcactggggagtttataagacttcctaaagctactgcg 102  Q
    ||||| || ||||| |||||||| |||||||| |||||||||||| || ||||||||    
T  48361302 ttagtgatctgcaacccagtcacaggggagttcataagacttcctgaatctactgcg 48361358  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 9443667 - 9443627
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggt 185  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9443667 gctggttttggattccaacctaaaactaatgaatataaggt 9443627  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 16716939 - 16716886
Alignment:
Q  145 gctggttttggcttccaacctaaaactaatgaatataaggtgatgtatatttgg 198  Q
    ||||||||||| ||| | |||||||||||||||||||| |||||  ||||||||    
T  16716939 gctggttttggtttctatcctaaaactaatgaatataaagtgatacatatttgg 16716886  T

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