View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2960_high_3 (Length: 447)

Name: NF2960_high_3
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2960_high_3
NF2960_high_3
[»] chr1 (1 HSPs)
chr1 (18-437)||(10010926-10011346)
[»] chr6 (2 HSPs)
chr6 (275-362)||(561565-561652)
chr6 (146-209)||(561424-561487)
[»] chr5 (2 HSPs)
chr5 (275-362)||(17688782-17688868)
chr5 (148-215)||(17688937-17689007)
[»] chr2 (2 HSPs)
chr2 (275-362)||(1678868-1678954)
chr2 (169-215)||(1678749-1678795)
[»] chr3 (1 HSPs)
chr3 (169-209)||(4778812-4778852)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 10010926 - 10011346
Alignment:
Q  18 ctaatattcagagaaacaattttaaaacctgttgaacctaggaaaatatgtaaacaaaagataaacaaataagaacaggtgtaaacaaaacgaacacctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10010926 ctaatattcagagaaacaattttaaaacctgttgaacctaggaaaatatgtaaacaaaagataaccaaataagaacaggtgtaaacaaaacgaacacctt 10011025  T
Q  118 ccatgcacatgcagcaactactttccttttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaagc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10011026 ccatgcacatgcagcaactactttccttttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaaaaagaagc 10011125  T
Q  218 aa-nnnnnnnnnnnnnnnnatggaagaaagaccaatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnnt 316  Q
    ||                 |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||       |    
T  10011126 aattttttttttggtttttatggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaatt 10011225  T
Q  317 ttccttaaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttaga 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011226 ttccttaaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttaga 10011325  T
Q  417 agagttggacatcaaattcat 437  Q
    |||||||||||||||||||||    
T  10011326 agagttggacatcaaattcat 10011346  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 561565 - 561652
Alignment:
Q  275 aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga 362  Q
    |||||||||| |||||||||||||||||||||||       ||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  561565 aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga 561652  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 561424 - 561487
Alignment:
Q  146 ttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaa 209  Q
    |||||||||||||||||| ||| ||||| |||||||||||| || |||||||||||||||||||    
T  561424 ttaacaccaagttctctcattcaattgtatgtatgctttcattagacactttcctttaaacaaa 561487  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 362
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
Q  275 aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga 362  Q
    |||||||||| ||||||||||||||||| |||||       ||| ||| ||||||||| |||| ||||||||||||||||||||||||    
T  17688868 aagagaggtgttcctgttttggagaattagacatcaaatttttt-ctttaaaattgtccttttcttctatattctttctcgtttctga 17688782  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 17689007 - 17688937
Alignment:
Q  148 aacaccaagttctctcctt---ccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaa 215  Q
    |||||||||||||||| ||   | ||||| |||||||||||| || ||||||||||||||||||| |||||    
T  17689007 aacaccaagttctctcattattcaattgtatgtatgctttcattagacactttcctttaaacaaaaaagaa 17688937  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
Q  275 aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga 362  Q
    |||||||||| ||||||||||||||||| |||||       |||| || ||||||||| |||| ||||||||||||||||||||||||    
T  1678868 aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga 1678954  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 1678749 - 1678795
Alignment:
Q  169 attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa 215  Q
    ||||| |||||||||||| || ||||||||||||||||||| |||||    
T  1678749 attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa 1678795  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 4778812 - 4778852
Alignment:
Q  169 attgtctgtatgctttcaatacacactttcctttaaacaaa 209  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  4778812 attgtatgtatgctttcattagacactttcctttaaacaaa 4778852  T

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