View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2960_high_7 (Length: 374)
Name: NF2960_high_7
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 17583555 - 17583898
Alignment:
| Q |
20 |
catgttcgtggcatcttttcttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattcc |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17583555 |
catgttagtggcatcttttcttctccttttatgtaaaatcggttgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattcc |
17583654 |
T |
|
| Q |
120 |
ctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagtttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17583655 |
ctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctc-agagtttt |
17583753 |
T |
|
| Q |
220 |
gaaacttactgtctcttctcttcgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccataatgacatgatt |
313 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||| |||||||| |
|
|
| T |
17583754 |
gaaacttactg-----tctcttcgctcactccaatcctcagcagcgtatgcatgcatgtatgtattcacttctctaccttctccccataataacatgatt |
17583848 |
T |
|
| Q |
314 |
ttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17583849 |
ttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
17583898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 14743528 - 14743184
Alignment:
| Q |
20 |
catgttcgtggcatcttttcttctccttttatgtaaaatcgggtgacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattcc |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14743528 |
catgttagtggcatcttttcttctccttttatgtaaaatcgggggacacaatttttcttgaaatcttaaacgatatgggctactaatcgttcaatattcc |
14743429 |
T |
|
| Q |
120 |
ctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagtttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14743428 |
ctccacaagcaagcccattaacccaacaaatcaccaaattaacggtatttattgcaatatcgtcattttcactgttcattttccaattctcaagagtttt |
14743329 |
T |
|
| Q |
220 |
gaaacttactgtctcttctcttcgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccataatgacatgatt |
313 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||| ||||||||||||||| | | |||||||||||||||||| ||||||| |
|
|
| T |
14743328 |
gaaacttactgtctcttcgctac-----ctccaatcctcagcagcatatgcatgcatgtatgtattcacttctctaccttctccccataagagcatgatt |
14743234 |
T |
|
| Q |
314 |
ttctcatgtatcaatctttgtttaattttcctgttttatgtttctttctt |
363 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14743233 |
ttctcatgtatcaatctttgttgaattttcctgttttatgtttctttctt |
14743184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University