View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_high_9 (Length: 359)
Name: NF2960_high_9
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 52712818 - 52712483
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712818 |
ccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
52712719 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtggg |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52712718 |
gaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtggg |
52712619 |
T |
|
| Q |
208 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712618 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
52712519 |
T |
|
| Q |
308 |
aagaaagcgtatttcttttggacttctttttcatct |
343 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52712518 |
aagaaagcgtatttcttttggacttctttttcatct |
52712483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 52721639 - 52721304
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
107 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
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| T |
52721639 |
ccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacct |
52721540 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtggg |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |
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| T |
52721539 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
52721440 |
T |
|
| Q |
208 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52721439 |
tattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaatta |
52721340 |
T |
|
| Q |
308 |
aagaaagcgtatttcttttggacttctttttcatct |
343 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
52721339 |
aagaaagcgtatttctgttggacttctttttcatct |
52721304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 52698999 - 52698664
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
107 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || ||||||||||||| |
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| T |
52698999 |
ccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacct |
52698900 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtggg |
207 |
Q |
| |
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||||||||||||| || ||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||| ||||||| || ||||||||||||||| |
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| T |
52698899 |
gaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtggg |
52698800 |
T |
|
| Q |
208 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
307 |
Q |
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| | |||||||||||| |||||||| || | |||| ||||||||||| || ||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
52698799 |
taatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaatta |
52698700 |
T |
|
| Q |
308 |
aagaaagcgtatttcttttggacttctttttcatct |
343 |
Q |
| |
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||||||| | ||||| |||||||||||||||||||| |
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| T |
52698699 |
aagaaagagaatttcatttggacttctttttcatct |
52698664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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