View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2960_low_12 (Length: 294)

Name: NF2960_low_12
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2960_low_12
NF2960_low_12
[»] chr4 (9 HSPs)
chr4 (18-285)||(53602212-53602477)
chr4 (192-269)||(8325357-8325435)
chr4 (211-269)||(37109349-37109407)
chr4 (189-265)||(32992636-32992713)
chr4 (189-269)||(49576869-49576950)
chr4 (211-263)||(7949452-7949504)
chr4 (211-263)||(23377982-23378034)
chr4 (210-266)||(46295120-46295176)
chr4 (85-129)||(47023469-47023513)
[»] chr3 (2 HSPs)
chr3 (210-269)||(19716217-19716276)
chr3 (211-263)||(10445137-10445189)
[»] chr1 (3 HSPs)
chr1 (210-269)||(19528324-19528383)
chr1 (192-269)||(952531-952609)
chr1 (84-129)||(33059756-33059801)
[»] chr6 (3 HSPs)
chr6 (192-269)||(14557982-14558059)
chr6 (213-269)||(10338174-10338230)
chr6 (211-269)||(33549124-33549182)
[»] chr8 (6 HSPs)
chr8 (210-269)||(16852360-16852419)
chr8 (210-269)||(19703484-19703543)
chr8 (211-269)||(968382-968440)
chr8 (211-269)||(6536540-6536598)
chr8 (211-269)||(18540318-18540376)
chr8 (85-130)||(29879089-29879134)
[»] chr7 (5 HSPs)
chr7 (210-269)||(38374596-38374655)
chr7 (211-269)||(26459408-26459466)
chr7 (211-269)||(33222390-33222448)
chr7 (211-269)||(43215204-43215262)
chr7 (192-263)||(15905652-15905723)
[»] chr2 (3 HSPs)
chr2 (210-269)||(37480095-37480154)
chr2 (210-268)||(26482114-26482171)
chr2 (211-269)||(42327393-42327451)
[»] scaffold0258 (1 HSPs)
scaffold0258 (211-269)||(15321-15379)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 53602212 - 53602477
Alignment:
Q  18 ataacgcggctcccttctagcttaaccaatgtccgtagttcaaacccaagcttggacagacatcggcgttaaaactcttatggagagtttgtcgcctatt 117  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53602212 ataacgctgctcccttctagcttaaccaatgtccgtagttcagacccaaacttggacagacatcggcgttaaaactcttatggagagtttgtcgcctatt 53602311  T
Q  118 tgtgtcccacaaaacacatcatagagtggtttatacatttgcgcgtgaaggatatatatannnnnnnnnnaagtccacccaaattgacatgtggagaatc 217  Q
    ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |           ||||||||||||||||||||| ||||||||    
T  53602312 tgtgtcccacaaaacacatgatagagtggtttatgcacttgcgcgtgaaggatatattt--tttttttttaagtccacccaaattgacatggggagaatc 53602409  T
Q  218 gaaccagagacctagaggaagagtacactcataggtcccaagccaacaccacatggagtggtctgtgc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53602410 gaaccagagacctagaggaagagtacactcataggtcccaagccaacaccacatggagtggtctgtgc 53602477  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 8325357 - 8325435
Alignment:
Q  192 ccacccaaattgacat-gtggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||||||  | |||||||||||||  |||||| ||||| ||| ||||||  ||||| ||||||||||||||    
T  8325357 ccacccaaattgacaccggggagaatcgaacctaagaccttgaggatgagcacactccaaggtctcaagccaacaccac 8325435  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 37109349 - 37109407
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  37109349 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccac 37109407  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 32992713 - 32992636
Alignment:
Q  189 agtccacccaaattgacat-gtggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaaca 265  Q
    ||||||| ||||||||||  | ||||||||||||  ||||||| ||||| ||| ||||||  ||||||||||||||||    
T  32992713 agtccactcaaattgacaccggggagaatcgaacttgagaccttgaggaggagcacactccaaggtcccaagccaaca 32992636  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 49576869 - 49576950
Alignment:
Q  189 agtccacccaaattgacatgtg-gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||||||||||  | |||||||||||| ||||||| ||||| ||| ||||||  | |||| ||||||| |||||    
T  49576869 agtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaataccac 49576950  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 7949452 - 7949504
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaa 263  Q
    |||||||||||| ||||||| ||||| ||| ||||||  ||||||||||||||    
T  7949452 gagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaa 7949504  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 23378034 - 23377982
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaa 263  Q
    |||||||||||| ||||||| ||||| ||| ||||||  ||||||||||||||    
T  23378034 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaa 23377982  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 46295176 - 46295120
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacac 266  Q
    ||||||||||||| ||||||| ||||| ||| ||||||  | |||||||||||||||    
T  46295176 ggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacac 46295120  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 47023469 - 47023513
Alignment:
Q  85 gttaaaactcttatggagagtttgtcgcctatttgtgtcccacaa 129  Q
    ||||||||||||| ||||||||||||| | ||||| |||||||||    
T  47023469 gttaaaactcttagggagagtttgtcgtccatttgggtcccacaa 47023513  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 19716276 - 19716217
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||||||||||||||||||| ||||| ||| ||||||   |||||||||||||||||||    
T  19716276 ggagaatcgaaccagagaccttgaggaggagcacactccatggtcccaagccaacaccac 19716217  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 10445137 - 10445189
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaa 263  Q
    |||||||||||| ||||||| ||||| ||| ||||||  ||||||||||||||    
T  10445137 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaa 10445189  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 19528324 - 19528383
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||| |||||    
T  19528324 ggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccac 19528383  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 952609 - 952531
Alignment:
Q  192 ccacccaaattgacat-gtggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||| |||||||||| | |||||||| |||| ||||| | ||||| ||| ||||||  ||||||||||||||||||||    
T  952609 ccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaacaccac 952531  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 33059801 - 33059756
Alignment:
Q  84 cgttaaaactcttatggagagtttgtcgcctatttgtgtcccacaa 129  Q
    |||||||||||||| |||||||||| |||| ||||| |||||||||    
T  33059801 cgttaaaactcttaaggagagtttgccgcccatttgggtcccacaa 33059756  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 14558059 - 14557982
Alignment:
Q  192 ccacccaaattgacatgtggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||||||   ||||||||||||| ||||||  ||||| ||| |||||   ||||||||||||||||||||    
T  14558059 ccacccaaattgacaccgggagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccac 14557982  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 10338174 - 10338230
Alignment:
Q  213 gaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||| ||||||| ||||| ||| |||||| ||||||||||||||| |||||    
T  10338174 gaatcgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 10338230  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 33549182 - 33549124
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  33549182 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 33549124  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 16852419 - 16852360
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  16852419 ggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 16852360  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 19703484 - 19703543
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  19703484 ggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccac 19703543  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 968440 - 968382
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  968440 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 968382  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 6536598 - 6536540
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||| ||||| ||||||| ||||| ||| |||||| ||||||||||||||| |||||    
T  6536598 gagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 18540376 - 18540318
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| |||||  |||||||||  |||||||||||||| |||||    
T  18540376 gagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccac 18540318  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 29879134 - 29879089
Alignment:
Q  85 gttaaaactcttatggagagtttgtcgcctatttgtgtcccacaaa 130  Q
    |||||||||||||  |||||||||||| ||||||| ||||||||||    
T  29879134 gttaaaactcttaaagagagtttgtcgtctatttgagtcccacaaa 29879089  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 38374596 - 38374655
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||||  |||||| ||||| ||| ||||||  ||||||||||||||||||||    
T  38374596 ggagaatcgaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccac 38374655  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 26459408 - 26459466
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  26459408 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccac 26459466  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 33222448 - 33222390
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| |||||||||   |||||||||||||| |||||    
T  33222448 gagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccac 33222390  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 43215262 - 43215204
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  43215262 gagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccac 43215204  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 15905652 - 15905723
Alignment:
Q  192 ccacccaaattgacatgtgg-agaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaa 263  Q
    ||||||||||||||||  || ||||||||||| |||||||| |||| ||| ||||||  ||||||||||||||    
T  15905652 ccacccaaattgacattagggagaatcgaacctgagaccta-aggaggagcacactcccaggtcccaagccaa 15905723  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 37480154 - 37480095
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    ||||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  37480154 ggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccac 37480095  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 26482171 - 26482114
Alignment:
Q  210 ggagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacacca 268  Q
    ||||||||||||| ||||||| ||| | ||| |||||| ||||||||||||||||||||    
T  26482171 ggagaatcgaacctgagaccttgag-aggagcacactcctaggtcccaagccaacacca 26482114  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 42327393 - 42327451
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  42327393 gagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccac 42327451  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 15321 - 15379
Alignment:
Q  211 gagaatcgaaccagagacctagaggaagagtacactcataggtcccaagccaacaccac 269  Q
    |||||||||||| ||||||| ||||| ||| ||||||  |||||||||||||| |||||    
T  15321 gagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccac 15379  T

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