View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_low_17 (Length: 250)
Name: NF2960_low_17
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 17583677 - 17583898
Alignment:
| Q |
18 |
ccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagttttgaaacttactgtctcttctctt |
117 |
Q |
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| T |
17583677 |
ccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctc-agagttttgaaacttactg-----tctctt |
17583770 |
T |
|
| Q |
118 |
cgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccataatgacatgattttctcatgtatcaatctttgtt |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17583771 |
cgctcactccaatcctcagcagcgtatgcatgcatgtatgtattcacttctctaccttctccccataataacatgattttctcatgtatcaatctttgtt |
17583870 |
T |
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| Q |
212 |
taattttcctgttttatgtttctttctt |
239 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
17583871 |
taattttcctgttttatgtttctttctt |
17583898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 14743406 - 14743184
Alignment:
| Q |
18 |
ccaacaaatcaccaaattaacggtatttattgcaatatcgtcgttttcactgttcattttccaattctcaagagttttgaaacttactgtctcttctctt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14743406 |
ccaacaaatcaccaaattaacggtatttattgcaatatcgtcattttcactgttcattttccaattctcaagagttttgaaacttactgtctcttcgcta |
14743307 |
T |
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| Q |
118 |
cgctcactccaatcctcagcagtgtatgcatgcatgtat------tcgtatctaccttctccccataatgacatgattttctcatgtatcaatctttgtt |
211 |
Q |
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| |||||||||||||||| ||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14743306 |
c-----ctccaatcctcagcagcatatgcatgcatgtatgtattcacttctctaccttctccccataagagcatgattttctcatgtatcaatctttgtt |
14743212 |
T |
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| Q |
212 |
taattttcctgttttatgtttctttctt |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14743211 |
gaattttcctgttttatgtttctttctt |
14743184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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