View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_low_2 (Length: 514)
Name: NF2960_low_2
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 45178409 - 45178074
Alignment:
| Q |
19 |
atctttcctatgtacattcaaattcctactcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattataga |
118 |
Q |
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| T |
45178409 |
atctttcctatgtacattcaaattcctactcaattaaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattataga |
45178310 |
T |
|
| Q |
119 |
ggccactgacgacacaacaaatagattgacagataaatttttccagttgttttgtttgtggtag-aagctaacttataattccttgtcacaaactgtcat |
217 |
Q |
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| T |
45178309 |
ggccaatgacgacacaacaaatagattgacagataaatttttccagttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactgtcat |
45178210 |
T |
|
| Q |
218 |
tttgcattagtgccgtagttctgcattgggaggtatttttgagcgtaccgaaacgcattga---------tattattattatgaaacaaagatgaacagt |
308 |
Q |
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| T |
45178209 |
tttgtattagtgccgtagttctgcattaggaggtatttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagt |
45178110 |
T |
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| Q |
309 |
cacggca-tttccttttccccctttgtttgtgttga |
343 |
Q |
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| T |
45178109 |
cacggcattttccttttccccctttgtttgtgttga |
45178074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 444 - 507
Target Start/End: Complemental strand, 45177906 - 45177843
Alignment:
| Q |
444 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcatctca |
507 |
Q |
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| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
45177843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 447
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
410 |
aacttgctaaaatgcacattttggtattggcaaaagca |
447 |
Q |
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| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 45171487 - 45171387
Alignment:
| Q |
54 |
aaatacatttctatctagtttgtgttgactgtattcttcttgtaatagcaggaggcaattatagaggccactgacgacacaacaaatagattgacagata |
153 |
Q |
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| T |
45171487 |
aaatgcatttctgtccagtttgttttgacggtattctttttgtattagcaggagcctgttatagaggtcaatgacgacgcagcagatgaattgacagata |
45171388 |
T |
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| Q |
154 |
a |
154 |
Q |
| |
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| T |
45171387 |
a |
45171387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 383
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
352 |
aaagtgtgatttatttttataggaccaaaaat |
383 |
Q |
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| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
352 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
392 |
Q |
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| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
352 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
396 |
Q |
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| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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