View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_low_22 (Length: 226)
Name: NF2960_low_22
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 39942820 - 39943039
Alignment:
| Q |
7 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaagaagcaagtaaaagcactgggaaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39942820 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaagaagcaagtaaaagcactgggaaag |
39942919 |
T |
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| Q |
107 |
ttcttctccttcagcttcttgtggggtttcttccaatggtttttcgctgctggtgattcttgtggatttacaaactttcccacatttggtctagaagcct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39942920 |
ttcttctccttcagcttcttgtggggtttcttccaatggtttttcgctgctggtgattcttgtggatttacaaactttcccacatttggtctagaagcct |
39943019 |
T |
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| Q |
207 |
atcaaaggaagtaagtgacc |
226 |
Q |
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|||||||||||||||||||| |
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| T |
39943020 |
atcaaaggaagtaagtgacc |
39943039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 28740134 - 28739916
Alignment:
| Q |
7 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaagaagcaagtaaaagcactgggaaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28740134 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaagaagcaagtaaaagcacttggaaag |
28740035 |
T |
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| Q |
107 |
ttcttctccttcagcttcttgtggggtttcttccaatggtttttcgctgctggtgattcttgtggatttacaaactttcccacatttggtctagaagcct |
206 |
Q |
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| T |
28740034 |
ttcttctcctttagctttttgtggggtttcttccaatggtttttcactgctggtgatgcttgtggatttgcaaacttccccacatttggtctagaagcct |
28739935 |
T |
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| Q |
207 |
atcaaaggaagtaagtgac |
225 |
Q |
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| T |
28739934 |
atcataggaagtacgtgac |
28739916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 28750076 - 28749858
Alignment:
| Q |
7 |
gacatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaagaagcaagtaaaagcactgggaaag |
106 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28750076 |
gacatatccaagtggtacagcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaagaagcaagtaaaagcacttggaaag |
28749977 |
T |
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| Q |
107 |
ttcttctccttcagcttcttgtggggtttcttccaatggtttttcgctgctggtgattcttgtggatttacaaactttcccacatttggtctagaagcct |
206 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28749976 |
ttcttctcctttagctttttgtggggtttcttccaatggtttttcactgctggtgatgcttgtggatttacaaacttccccacatttggtctagaagcct |
28749877 |
T |
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| Q |
207 |
atcaaaggaagtaagtgac |
225 |
Q |
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|||| |||||||| ||||| |
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| T |
28749876 |
atcataggaagtacgtgac |
28749858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 28754076 - 28753890
Alignment:
| Q |
26 |
gcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaagaagcaagtaaaagcactgggaaagttcttctccttcagcttct |
125 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |
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| T |
28754076 |
gcaacagctcatcttatcaacagtttccatacatctgaaggtgccaaactagcaaagaagcaagtaaaagcacttggaaagttcttctcctttagctttt |
28753977 |
T |
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| Q |
126 |
tgtggggtttcttccaatggtttttcgctgctggtgattcttgtggatttacaaactttcccacatttggtctagaagcctatcaaa |
212 |
Q |
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| T |
28753976 |
tgtggggtttcttccaatggtttttcactgctggtgatgcttgtggatttacaaacttccccacatttggtctagaagcatatcaaa |
28753890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 29247293 - 29247219
Alignment:
| Q |
8 |
acatatccaagtggtaccgcaacagctcatcttatcaacagtttccatacatcagaaggtgccaaactagcaaag |
82 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||| ||||| || | |||| ||||||||||||||| |
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| T |
29247293 |
acatatccaagtggtactgcaactgctcatctcatcaacagcttccacactcctcaaggagccaaactagcaaag |
29247219 |
T |
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