View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2960_low_23 (Length: 225)
Name: NF2960_low_23
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 41654807 - 41654624
Alignment:
| Q |
1 |
tgaaaagaagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654807 |
tgaaaagaagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttg |
41654708 |
T |
|
| Q |
101 |
caaaagtgtgatgtacctgaagacaaagac---atcgataagatcttctagaaaagaatattgaatccacaactttccaaataa |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41654707 |
caaaagtgtgatgtacctgaagacaaagacatgatcgataagatcttctagaaaagaatattgaatccacaactttccaaataa |
41654624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 28815873 - 28815982
Alignment:
| Q |
35 |
gaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacctgaagacaaagacatcg |
134 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
28815873 |
gaaccttgagtctctgtttactgtccttatcccagaaattaaaagcaccgtcagatccagcagttgcaaaagtgtgatgtacctgaaatcaaagaaatca |
28815972 |
T |
|
| Q |
135 |
ataagatctt |
144 |
Q |
| |
|
|||||||||| |
|
|
| T |
28815973 |
ataagatctt |
28815982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 1460483 - 1460565
Alignment:
| Q |
36 |
aaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacct |
118 |
Q |
| |
|
|||||| || ||||||||||| | ||| ||||| |||| ||||||||||||||| ||||| || ||||| ||||| ||||||| |
|
|
| T |
1460483 |
aaccttaagcctctgtttactatccttgtcccaaaaattaaaagcaccatcagaaccagccgtagcaaatgtgtggtgtacct |
1460565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University