View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_low_4 (Length: 423)
Name: NF2960_low_4
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 141 - 409
Target Start/End: Original strand, 30356672 - 30356940
Alignment:
| Q |
141 |
ctctgaaatgacgttgtcagttatttgctcagggaggaagagatgttgggggaatgttgtgaggctttatcttgcattcttttacatgtggagttggtat |
240 |
Q |
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| T |
30356672 |
ctctgaaatgacgatgtcggttatttgctcagggaggaagagatgttgggggaatgttgtgaggctttatcttgcattcttttacatgtggagttggtat |
30356771 |
T |
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| Q |
241 |
cttacacctaacaaaggttacgctgttagtggagtacaccgattgttgactgcggtagagtcgagtacccgccatgatctttaggaaatcattcgaaata |
340 |
Q |
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| T |
30356772 |
cttacacctaacaaaggttacgctgttagtggagtacaccgattgttgactgcggtagagtcgagtacccgccatgatctttaggaaatcattcaaaata |
30356871 |
T |
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| Q |
341 |
aaacaataccactgaaagtttcaattttttcttggaagttgggaaggaatcgactttctaccaaagata |
409 |
Q |
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| T |
30356872 |
aaacaataccaccaaaagtttcaattttttcttggaagttgggaaagaatcgactttctaccaaagata |
30356940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30356506 - 30356633
Alignment:
| Q |
1 |
taacgacaacttggtgagggtggtgggagacggcacaagaacgtttgtgagagattgagaaggttgttcgactaacagagagttgtttcgctacactagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30356506 |
taacgacaacttggtgagggtggtgggagacggcacaagaacgtttgtgagagattgagaaggttgttcgactaacagagagttgtttcgctacactagt |
30356605 |
T |
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| Q |
101 |
agatatgtatgcgatagattgacagttt |
128 |
Q |
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| T |
30356606 |
agatatgtatgcgatagattgacagttt |
30356633 |
T |
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