View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2960_low_5 (Length: 391)
Name: NF2960_low_5
Description: NF2960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2960_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 20103426 - 20103801
Alignment:
| Q |
1 |
tggcgacaatggctatgaagagagaacttaagccaataagaagcttcattggcaagtttctattgaagtcttcgacttgttttcgagaagtgagtatagc |
100 |
Q |
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|||| |||||||||| |||||||||||| || |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20103426 |
tggcaacaatggctacgaagagagaactaaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacttgttttcgagaagtgagtaaagc |
20103525 |
T |
|
| Q |
101 |
aaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgcaggttgtccttcgaatgttggttttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
20103526 |
aaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcgaatgcaggctgtccttcgaatgttggttttcca |
20103625 |
T |
|
| Q |
201 |
gtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactgagcatgactgtgatgtgtctttcaacc |
300 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20103626 |
gtattctgattacctccggggacgctgcctgatgtagcaaaggagacgcctgcgacgagtgccgctacaactgagcatgactgtgatgtgtctttcaacc |
20103725 |
T |
|
| Q |
301 |
actcaatgcttttctttagaagttctttgtgttcctccttaaagatttcacctggggtttttctatcgttgttgct |
376 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20103726 |
actcaatgcttttatctagaagttctttgtgttcctccttaaagatttcacctggggtttttctatcgttgttgct |
20103801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 20079109 - 20079484
Alignment:
| Q |
1 |
tggcgacaatggctatgaagagagaacttaagccaataagaagcttcattggcaagtttctattgaagtcttcgacttgttttcgagaagtgagtatagc |
100 |
Q |
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|||| |||||||||| ||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20079109 |
tggcaacaatggctacgaagagagaacttaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacttgttttcgagaagtgagtataga |
20079208 |
T |
|
| Q |
101 |
aaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgcaggttgtccttcgaatgttggttttcct |
200 |
Q |
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|||||||||||| ||||||||| | |||||||||||||||||||| ||| |||| |||||||||||||||||||| ||||||||||| ||||||| ||| |
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| T |
20079209 |
aaggaacatgattagtgcagtgaccgagaagtaaagtccaattaatgaacatatcgagaatacttcaaatgcaggctgtccttcgaaatttggtttccct |
20079308 |
T |
|
| Q |
201 |
gtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactgagcatgactgtgatgtgtctttcaacc |
300 |
Q |
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| | ||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20079309 |
gattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgagcatgactctgatgtgtctttcaacc |
20079408 |
T |
|
| Q |
301 |
actcaatgcttttctttagaagttctttgtgttcctccttaaagatttcacctggggtttttctatcgttgttgct |
376 |
Q |
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|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
20079409 |
actcaatgctgctttgtagaagttctttgtgttcctccttaaagatttcacctggggtttttccttctttgttgct |
20079484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 76 - 363
Target Start/End: Complemental strand, 19903881 - 19903594
Alignment:
| Q |
76 |
cttgttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgcagg |
175 |
Q |
| |
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||||||||| | |||||||||||| |||||| | ||||||| |||| ||||||||||||||||| |||| ||| || ||||||||| ||||||||||| |
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| T |
19903881 |
cttgttttctacaagtgagtatagaaaggaataccatgagtgaagtgacagagaagtaaagtccagttaatgaacatgtagagaataaatcaaatgcagg |
19903782 |
T |
|
| Q |
176 |
ttgtccttcgaatgttggttttcctgtactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactgag |
275 |
Q |
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|||||||| || ||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| || |||||||||||||| |||| |||| |
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| T |
19903781 |
ttgtccttttaaatttggtttccctgattggtcattgcctccagggacagtgcatgatgtagcaaaggagacgcctgcgacgagtgctgccacaattgag |
19903682 |
T |
|
| Q |
276 |
catgactgtgatgtgtctttcaaccactcaatgcttttctttagaagttctttgtgttcctccttaaagatttcacctggggtttttc |
363 |
Q |
| |
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| ||||| || ||||| |||||||||||||||||| | | |||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
19903681 |
cttgactctgttgtgtttttcaaccactcaatgctgctttgtagaagttgtttgttttcctccttaaagatttcacctggggtttttc |
19903594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 20130647 - 20131006
Alignment:
| Q |
2 |
ggcgacaatggctatgaagagagaacttaagccaataagaagcttcattggcaagtttctattgaagtcttcgacttgttttcgagaagtgagtatagca |
101 |
Q |
| |
|
||||||||||| || ||||| |||| ||| ||||||||||||||| | |||||||||||||| || |||||||||||||||||| | ||||||||| | |
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| T |
20130647 |
ggcgacaatggatacgaagacagaagttaggccaataagaagcttaagtggcaagtttctatcaaaatcttcgacttgttttcgatcaatgagtatagaa |
20130746 |
T |
|
| Q |
102 |
aggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcaaatgcaggttgtccttcgaatgttggttttcctg |
201 |
Q |
| |
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||||||| ||||||||||||| |||| ||||||| ||||||||| |||||||| | |||| |||| ||||||| ||| |||| ||| || ||| |||| |
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| T |
20130747 |
aggaacaagatgagtgcagtgacagaaaagtaaactccaattaatgaagatattgcgaatccttctaatgcagtatgttcttctgatgatgatttccctg |
20130846 |
T |
|
| Q |
202 |
tactctgattgcctccggggacgctgcctgatgtagcaaaggagacacccgcgacgagtgctgctacaactgagcatgactgtgatgtgtctttcaacca |
301 |
Q |
| |
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| || ||||||||||||||| |||| | |||| || ||||||| || || |||| |||||||||| |||||||||| |||| ||| ||| | ||||| |
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| T |
20130847 |
tttccttattgcctccggggacactgcttaatgttgcgaaggagatgccggcaacgattgctgctacagctgagcatgattgtgttgtttctattaacca |
20130946 |
T |
|
| Q |
302 |
ctcaatgcttttctttagaagttctttgtgttcctccttaaagatttcacctggggtttt |
361 |
Q |
| |
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|| | |||| || | ||||||||||||| ||| ||||||||| | ||||| ||| ||||| |
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| T |
20130947 |
ctgagtgctattttgtagaagttctttgcgtttctccttaaatagttcacttggcgtttt |
20131006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 23279848 - 23279784
Alignment:
| Q |
80 |
ttttcgagaagtgagtatagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaatta |
144 |
Q |
| |
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|||||||||||||||||| | |||||||| | |||||||||| ||||||| |||| ||||||| |
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|
| T |
23279848 |
ttttcgagaagtgagtatggacaggaacattacgagtgcagtgacagagaaacaaagaccaatta |
23279784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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