View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961-Insertion-1 (Length: 904)

Name: NF2961-Insertion-1
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961-Insertion-1
NF2961-Insertion-1
[»] chr2 (6 HSPs)
chr2 (8-899)||(19009082-19009963)
chr2 (721-763)||(33602356-33602398)
chr2 (547-579)||(20428672-20428704)
chr2 (547-579)||(23856071-23856103)
chr2 (721-768)||(8385017-8385064)
chr2 (781-831)||(7530056-7530106)
[»] chr4 (8 HSPs)
chr4 (48-309)||(39879011-39879260)
chr4 (423-505)||(39878785-39878867)
chr4 (547-579)||(8938353-8938385)
chr4 (721-768)||(43335142-43335189)
chr4 (725-768)||(44022000-44022043)
chr4 (725-763)||(4727461-4727499)
chr4 (722-763)||(3505663-3505703)
chr4 (731-768)||(37316041-37316078)
[»] chr7 (5 HSPs)
chr7 (441-535)||(17072459-17072553)
chr7 (448-535)||(14553308-14553394)
chr7 (780-826)||(40803689-40803735)
chr7 (723-763)||(47453947-47453987)
chr7 (721-768)||(3781297-3781344)
[»] chr6 (6 HSPs)
chr6 (423-579)||(21163136-21163297)
chr6 (424-535)||(16227014-16227124)
chr6 (442-510)||(9868257-9868325)
chr6 (547-579)||(22832801-22832833)
chr6 (726-768)||(15081369-15081411)
chr6 (731-768)||(2310407-2310444)
[»] chr1 (8 HSPs)
chr1 (423-481)||(20141761-20141819)
chr1 (442-531)||(11745839-11745928)
chr1 (42-185)||(20141350-20141493)
chr1 (726-768)||(14358126-14358168)
chr1 (731-768)||(2886122-2886159)
chr1 (780-828)||(38664399-38664447)
chr1 (726-768)||(2219567-2219609)
chr1 (632-701)||(1763185-1763254)
[»] chr8 (4 HSPs)
chr8 (423-512)||(4032637-4032725)
chr8 (427-579)||(45528941-45529098)
chr8 (427-535)||(13401168-13401276)
chr8 (781-833)||(15559186-15559238)
[»] scaffold0295 (2 HSPs)
scaffold0295 (423-579)||(18136-18297)
scaffold0295 (114-185)||(18565-18636)
[»] scaffold1390 (1 HSPs)
scaffold1390 (439-579)||(1314-1459)
[»] scaffold0377 (2 HSPs)
scaffold0377 (547-579)||(4571-4603)
scaffold0377 (547-579)||(8610-8642)
[»] chr5 (7 HSPs)
chr5 (724-768)||(20364511-20364555)
chr5 (547-579)||(26697940-26697972)
chr5 (547-579)||(26967672-26967704)
chr5 (726-761)||(38978701-38978736)
chr5 (836-898)||(4439204-4439266)
chr5 (731-768)||(24534553-24534590)
chr5 (726-763)||(41268277-41268314)
[»] chr3 (2 HSPs)
chr3 (724-763)||(2868518-2868557)
chr3 (726-763)||(8498201-8498238)
[»] scaffold1024 (1 HSPs)
scaffold1024 (438-528)||(1876-1966)


Alignment Details
Target: chr2 (Bit Score: 616; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 8 - 899
Target Start/End: Original strand, 19009082 - 19009963
Alignment:
Q  8 tcctctttctcacaggcatgttagggagattgtaactgtcatttggaagccacccaccatcaattggattaagactaataccgacggctctgttatcaat 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19009082 tcctccttctcacaggcatgttagggagattgtaactgtcatttggaagccacccaccatcaattggattaagactaataccgacggctctattatcaat 19009181  T
Q  108 gccatttcctcttgtggtgggatttttcgggacttccgaggttcttttcttggagcttttgctagtaacctcggagaggggtctgtttatgaggcgaaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  19009182 gccatttcctcttgtggtgggatttttcgggacttccgaggttcttttcttggagcttttgctagtaacctcagagaagggtctgtttatgaggcgaaga 19009281  T
Q  208 taacggggctcgtgatggatatggagtttgcttcccatcataattggtctagattgtggctagaaaacgattcttctagtgcgattaatgctttcaaaaa 307  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19009282 taacagggctcgtgatggctatggagtttgcttcccatcataattggtctagattgtggctagaaaacgattcttctaatgcgattaatgctttcaaaaa 19009381  T
Q  308 tccatctctcgttccacttctattacggaatcgttggcataattgcatgcaatatggattgctgttatttgctcacatatttatggctgccttgggacat 407  Q
    |||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19009382 tccatctctccttccgcttcgattacggaatcgttagcataattgcatgcaatatggattgctgttatttgctcacatatttatggctgccttgggacat 19009481  T
Q  408 ggcttgaatataacgtcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagc 507  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||        
T  19009482 ggcttgaatataacgtcttggtatcatactatgcctgcttcattgtcagttgattttgctagagacagacatgggctacctaactttagatttccg---- 19009577  T
Q  508 ctgttctagtcatttatttttgtcgttttttccccagaaggttttggcctagtcccccctcttttgtacataannnnnnnnnnnnnnaataatattacgt 607  Q
          |||||||||||||||||||||||||   |||| ||||||||||||||||||||||||| ||||||||              |||||||||||||    
T  19009578 ------tagtcatttatttttgtcgtttttttttcagagggttttggcctagtcccccctctttggtacataa---tttttttttttaataatattacgt 19009668  T
Q  608 actggaatgcggtaaaagatgaaggtttctgttgagtgtcaacctaattgggctacctcagactcaccttgatgcctaacttttctcttggcctatc--- 704  Q
    | ||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||       
T  19009669 attggaatgcggtaaaagatggaggtttctgttgggtgtcaacctagttgggctgcctcagactcaccttgatgcctaacttttctcttggcctatcgaa 19009768  T
Q  705 -nnnnnnnnnnnnnnnggttctaaaataattgatcaatttcacttttcaatacaatattagttacnnnnnnnnncatttataactctacttaataccact 803  Q
                    |||||||||||||||||||||||||||||||||||||||||||| ||||         ||||||||||||||||||||||||||    
T  19009769 aaaagaaaaaaaaaaaggttctaaaataattgatcaatttcacttttcaatacaatattaattac-ttttttttcatttataactctacttaataccact 19009867  T
Q  804 tttatcattcctaactcaatatattatactagtattttacgtttatgataatagagaatgcaacaatatttgataagacacacaaaattatttttc 899  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19009868 tttatcattcccaactcaatatattatactagtattttacgtttatgataatagagaatgcaacaatatttgataagacacacaaaattatttttc 19009963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 721 - 763
Target Start/End: Complemental strand, 33602398 - 33602356
Alignment:
Q  721 gttctaaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  33602398 gttctaaaataactgatctatttcacttttcaatacaatatta 33602356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 20428672 - 20428704
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  20428672 ggttttggcctagtcccccctcttttgtacata 20428704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 23856071 - 23856103
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  23856071 ggttttggcctagtcccccctcttttgtacata 23856103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 768
Target Start/End: Original strand, 8385017 - 8385064
Alignment:
Q  721 gttctaaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||||||||||||   |||||||||||||||||||||||| ||||    
T  8385017 gttctaaaataattgacttatttcacttttcaatacaatattaattac 8385064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 781 - 831
Target Start/End: Complemental strand, 7530106 - 7530056
Alignment:
Q  781 ttataactctacttaataccacttttatcattcctaactcaatatattata 831  Q
    ||||||||||| |||||| ||||||||||||| |||| |||||||| ||||    
T  7530106 ttataactctaattaatatcacttttatcatttctaattcaatatagtata 7530056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 48 - 309
Target Start/End: Complemental strand, 39879260 - 39879011
Alignment:
Q  48 atttggaagccacccaccatcaattggattaagactaataccgacggctctgttatcaatgccatttcctcttgtggtgggatttttcgggacttccgag 147  Q
    ||||||||||| |||||||||| |||||| ||| ||||||| |||||||| || |||||  ||||| |||||||||||||||||||||| |||||  |||    
T  39879260 atttggaagccgcccaccatcacttggatcaaggctaatactgacggctcagtaatcaactccattgcctcttgtggtgggatttttcgtgactttagag 39879161  T
Q  148 gttcttttcttggagcttttgctagtaacctcggagaggggtctgtttatgaggcgaagataacggggctcgtgatggatatggagtttgcttcccatca 247  Q
    ||||            ||||||||||||||||||||||  || ||| | ||| ||| |||| ||  | ||| | |||| ||||||||||||| ||||  |    
T  39879160 gttc------------ttttgctagtaacctcggagagatgtttgtctctgaagcggagattacaagactcataatggctatggagtttgctgcccaaaa 39879073  T
Q  248 taattggtctagattgtggctagaaaacgattcttctagtgcgattaatgctttcaaaaatc 309  Q
    ||||||| ||||||||||||| || |  ||||||||||||||| | ||||| ||||||||||    
T  39879072 taattggactagattgtggcttgagagtgattcttctagtgcggtgaatgcgttcaaaaatc 39879011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 39878867 - 39878785
Alignment:
Q  423 tcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgta 505  Q
    ||||||||||||| |||||||  | ||||| |  ||||||||||||||||||||||||| || ||||  ||||||||| ||||    
T  39878867 tcttggtatcatactatgcctaattcattggcgattgattttgctagagacagacatggtctgcctaattttagattttcgta 39878785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 8938385 - 8938353
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  8938385 ggttttggcctagtcccccctcttttgtacata 8938353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 768
Target Start/End: Complemental strand, 43335189 - 43335142
Alignment:
Q  721 gttctaaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    |||||||||||| ||||  |||||||||||||||||||||||| ||||    
T  43335189 gttctaaaataactgatttatttcacttttcaatacaatattaattac 43335142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 768
Target Start/End: Complemental strand, 44022043 - 44022000
Alignment:
Q  725 taaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||    
T  44022043 taaaataattgatccatttcaattttcaatacaatattaattac 44022000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 725 - 763
Target Start/End: Original strand, 4727461 - 4727499
Alignment:
Q  725 taaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  4727461 taaaataattgatccatttcacttttcaatgcaatatta 4727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 763
Target Start/End: Original strand, 3505663 - 3505703
Alignment:
Q  722 ttctaaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  3505663 ttctaaaa-aattgatcaatttcatttttcaatacaatatta 3505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 768
Target Start/End: Complemental strand, 37316078 - 37316041
Alignment:
Q  731 aattgatcaatttcacttttcaatacaatattagttac 768  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  37316078 aattgatccatttcacttttcaatacaatattaattac 37316041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 441 - 535
Target Start/End: Complemental strand, 17072553 - 17072459
Alignment:
Q  441 cctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttatttttgtcgttt 535  Q
    |||||| || ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||| | ||| ||||||| ||||||||    
T  17072553 cctgcttcactgtcagttgattttgctagagacagacataggcttcctaactttagatttccgtagcttgtttttgtcgtttatttatgtcgttt 17072459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 448 - 535
Target Start/End: Complemental strand, 14553394 - 14553308
Alignment:
Q  448 cattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttatttttgtcgttt 535  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||   ||||||| ||| ||||||||||||    
T  14553394 cattgtcagttgattttgcaagagacagacatgggctgcctaactttagatttccgtaaccctatctagtc-tttctttttgtcgttt 14553308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 780 - 826
Target Start/End: Complemental strand, 40803735 - 40803689
Alignment:
Q  780 tttataactctacttaataccacttttatcattcctaactcaatata 826  Q
    |||||||||||| |||||||||||||||||||||| || ||||||||    
T  40803735 tttataactctagttaataccacttttatcattcccaattcaatata 40803689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 723 - 763
Target Start/End: Original strand, 47453947 - 47453987
Alignment:
Q  723 tctaaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  47453947 tctaaaataattgagccatttcacttttcaatacaatatta 47453987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 768
Target Start/End: Complemental strand, 3781344 - 3781297
Alignment:
Q  721 gttctaaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||||||||||| |||| ||||||||||||| |||||||| ||||    
T  3781344 gttctaaaataattggtcaaattcacttttcaatgcaatattaattac 3781297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 423 - 579
Target Start/End: Complemental strand, 21163297 - 21163136
Alignment:
Q  423 tcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcattt 522  Q
    |||||||||||||||||||||||  ||||| ||| ||| || |||||||||||||||||| | ||||  ||||||||||| |||| ||||   ||| |||    
T  21163297 tcttggtatcataatatgcctgcctcattggcagctgaattagctagagacagacatgggttgcctaattttagatttccttagcatgtttatgtctttt 21163198  T
Q  523 atttttgtcg-----ttttttccccagaaggttttggcctagtcccccctcttttgtacata 579  Q
    |||| |||||     |||| |   |||| |||||||||||||||||||||||||||||||||    
T  21163197 atttctgtcgttcctttttgttttcagagggttttggcctagtcccccctcttttgtacata 21163136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 424 - 535
Target Start/End: Original strand, 16227014 - 16227124
Alignment:
Q  424 cttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcattta 523  Q
    ||||||||||||  |||||| |  ||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||   ||||||| |||     
T  16227014 cttggtatcatagcatgcctacatcattgtcagttgattttgcaagagacatacatgggctgcctaactttagatttccgtagccatctctagtc-tttc 16227112  T
Q  524 tttttgtcgttt 535  Q
    ||||||||||||    
T  16227113 tttttgtcgttt 16227124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 442 - 510
Target Start/End: Original strand, 9868257 - 9868325
Alignment:
Q  442 ctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctg 510  Q
    ||||| || |||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||    
T  9868257 ctgcttcactgtcagttgactatgctagagacagacatcggctgcctaactttagatttccgtagcctg 9868325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 22832833 - 22832801
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  22832833 ggttttggcctagtcccccctcttttgtacata 22832801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 768
Target Start/End: Original strand, 15081369 - 15081411
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||    
T  15081369 aaaataactgaacaatttcacttttcaatacaatattaattac 15081411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 768
Target Start/End: Complemental strand, 2310444 - 2310407
Alignment:
Q  731 aattgatcaatttcacttttcaatacaatattagttac 768  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  2310444 aattgaccaatttcacttttcaatacaatattaattac 2310407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 20141761 - 20141819
Alignment:
Q  423 tcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgg 481  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  20141761 tcttggtatcataatatgcctgcttcattgacggttgattttgctagagacagacatgg 20141819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 442 - 531
Target Start/End: Complemental strand, 11745928 - 11745839
Alignment:
Q  442 ctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttatttttgtc 531  Q
    ||||| || ||||||||||||||| ||||||||| ||||||||  ||| ||||||||||| ||| |||||| | ||||||||||||||||    
T  11745928 ctgcttcactgtcagttgattttgttagagacaggcatgggctgtctaactttagatttctgtatcctgtttttgtcatttatttttgtc 11745839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 20141350 - 20141493
Alignment:
Q  42 actgtcatttggaagccacccaccatcaattggattaagactaataccgacggctctgttatcaatgccatttcctcttgtggtgggatttttcgggact 141  Q
    ||||| ||||||||||| |||||||||  |||| | |||   ||||| |||||||| || |||||| ||||||| ||||||||||| || ||||| ||||    
T  20141350 actgttatttggaagccgcccaccatctcttgggtcaaggtgaatactgacggctcggtaatcaattccatttcatcttgtggtggaatatttcgtgact 20141449  T
Q  142 tccgaggttcttttcttggagcttttgctagtaacctcggagag 185  Q
    |   |||  ||||||| ||||| |||  ||||||| ||||||||    
T  20141450 ttataggggcttttctaggagccttttttagtaacatcggagag 20141493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 768
Target Start/End: Complemental strand, 14358168 - 14358126
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  14358168 aaaataaatgatcaatttcacttttcaatacaatattaattac 14358126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 731 - 768
Target Start/End: Original strand, 2886122 - 2886159
Alignment:
Q  731 aattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2886122 aattgatcaatttcacttttcaatacaatattaattac 2886159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 780 - 828
Target Start/End: Original strand, 38664399 - 38664447
Alignment:
Q  780 tttataactctacttaataccacttttatcattcctaactcaatatatt 828  Q
    |||||||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  38664399 tttataactctaattaatactactttcatcattcctaattcaatatatt 38664447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 726 - 768
Target Start/End: Complemental strand, 2219609 - 2219567
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||||||| | |||||||||||||||||||||||| ||||    
T  2219609 aaaataattgaaccatttcacttttcaatacaatattaattac 2219567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 701
Target Start/End: Original strand, 1763185 - 1763254
Alignment:
Q  632 gtttctgttgagtgtcaacctaattgggctacctcagactcaccttgatgcctaacttttctcttggcct 701  Q
    |||||||||| ||| ||||||||||||| | | | |||||| ||  |||||| |||||||||||||||||    
T  1763185 gtttctgttgggtgccaacctaattgggatgcttaagactctcccggatgcccaacttttctcttggcct 1763254  T

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Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 423 - 512
Target Start/End: Original strand, 4032637 - 4032725
Alignment:
Q  423 tcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgtt 512  Q
    |||||||||||||||||||||||  ||||| | |||||||||||||||||| ||||||| |||||||  ||||||||||| |||| ||||    
T  4032637 tcttggtatcataatatgcctgcctcattggcggttgattttgctagagactgacatggtctaccta-ttttagatttccttagcatgtt 4032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 427 - 579
Target Start/End: Original strand, 45528941 - 45529098
Alignment:
Q  427 ggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttattt 526  Q
    ||||||||||| || ||||| |||||  |||| ||||||||||||||||||||||| | ||||  ||||||||||| |||| |||| | ||| |||||||    
T  45528941 ggtatcataatttggctgcttcattggaagtttattttgctagagacagacatgggtttcctaattttagatttccttagcatgtttttgtcttttattt 45529040  T
Q  527 ttgtcg-----ttttttccccagaaggttttggcctagtcccccctcttttgtacata 579  Q
      ||||     |||| |   |||| ||| |||||||||||||| ||||||||||||||    
T  45529041 ccgtcgtttctttttgttttcagagggtcttggcctagtccccactcttttgtacata 45529098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 427 - 535
Target Start/End: Original strand, 13401168 - 13401276
Alignment:
Q  427 ggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttattt 526  Q
    ||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||| ||  ||||  ||||| ||||| |||| ||||   ||| |||||||    
T  13401168 ggtatcataatttgcctgctccattggcagttgattttgctatagacagacatgagcggcctaattttagttttccttagcatgtttctgtcttttattt 13401267  T
Q  527 ttgtcgttt 535  Q
     ||||||||    
T  13401268 ctgtcgttt 13401276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 781 - 833
Target Start/End: Complemental strand, 15559238 - 15559186
Alignment:
Q  781 ttataactctacttaataccacttttatcattcctaactcaatatattatact 833  Q
    ||||||||||| ||||||||||||| |||| |||||| |||||||||| ||||    
T  15559238 ttataactctaattaataccactttcatcactcctaattcaatatattctact 15559186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 423 - 579
Target Start/End: Complemental strand, 18297 - 18136
Alignment:
Q  423 tcttggtatcataatatgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcattt 522  Q
    ||||||| ||||| | |||||||| ||||| ||| ||||||||||||||||||||||||  ||||||  ||||| ||||| || | | ||   ||| |||    
T  18297 tcttggtttcatactttgcctgctccattgacagctgattttgctagagacagacatggattacctaattttaggtttccctaacatttttctgtctttt 18198  T
Q  523 atttttgtcgttt--tttc---cccagaaggttttggcctagtcccccctcttttgtacata 579  Q
    |||| ||||||||  ||||    || || |||||||||||||||||||||||||||||||||    
T  18197 atttctgtcgttttctttcatttcctgagggttttggcctagtcccccctcttttgtacata 18136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 18636 - 18565
Alignment:
Q  114 tcctcttgtggtgggatttttcgggacttccgaggttcttttcttggagcttttgctagtaacctcggagag 185  Q
    |||||||||||||| |||||||| |||||  ||||  ||||||| |||||||| ||||||||| ||||||||    
T  18636 tcctcttgtggtggtatttttcgtgactttagagggacttttctgggagctttcgctagtaacatcggagag 18565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 579
Target Start/End: Complemental strand, 1459 - 1314
Alignment:
Q  439 tgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgtt-ctagtcatttatttttgtcgtttt- 536  Q
    |||||||| ||||| | | ||||||||||||||||||||||||  | ||||  ||||||||||| || | | || ||| || ||||||| |||||||||     
T  1459 tgcctgctccattgacggctgattttgctagagacagacatggattgcctaattttagatttccctaacatttttcta-tcttttatttctgtcgttttc 1361  T
Q  537 -ttcc---ccagaaggttttggcctagtcccccctcttttgtacata 579  Q
     |||    || || |||||||||||||||||||||||||||||||||    
T  1360 tttcatttcctgagggttttggcctagtcccccctcttttgtacata 1314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 4603 - 4571
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  4603 ggttttggcctagtcccccctcttttgtacata 4571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Complemental strand, 8642 - 8610
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  8642 ggttttggcctagtcccccctcttttgtacata 8610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 768
Target Start/End: Original strand, 20364511 - 20364555
Alignment:
Q  724 ctaaaataattgatcaatttcacttttcaatacaatattagttac 768  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||    
T  20364511 ctaaaaaaattgatcaatttcacctttcaatacaatattaattac 20364555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 26697940 - 26697972
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  26697940 ggttttggcctagtcccccctcttttgtacata 26697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 26967672 - 26967704
Alignment:
Q  547 ggttttggcctagtcccccctcttttgtacata 579  Q
    |||||||||||||||||||||||||||||||||    
T  26967672 ggttttggcctagtcccccctcttttgtacata 26967704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 726 - 761
Target Start/End: Original strand, 38978701 - 38978736
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatat 761  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38978701 aaaataattgatccatttcacttttcaatacaatat 38978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 836 - 898
Target Start/End: Complemental strand, 4439266 - 4439204
Alignment:
Q  836 tattttacgtttatgataatagagaatgcaacaatatttgataagacacacaaaattattttt 898  Q
    |||||||| |||||| ||||||||| |||| ||| | |||| ||||||| |||||||||||||    
T  4439266 tattttacatttatggtaatagagagtgcatcaacaattgacaagacactcaaaattattttt 4439204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 768
Target Start/End: Original strand, 24534553 - 24534590
Alignment:
Q  731 aattgatcaatttcacttttcaatacaatattagttac 768  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  24534553 aattgattaatttcacttttcaatacaatattaattac 24534590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 763
Target Start/End: Original strand, 41268277 - 41268314
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  41268277 aaaataattgatcaatttcatttttcaatgcaatatta 41268314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 763
Target Start/End: Original strand, 2868518 - 2868557
Alignment:
Q  724 ctaaaataattgatcaatttcacttttcaatacaatatta 763  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  2868518 ctaaaataactgatccatttcacttttcaatacaatatta 2868557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 726 - 763
Target Start/End: Original strand, 8498201 - 8498238
Alignment:
Q  726 aaaataattgatcaatttcacttttcaatacaatatta 763  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  8498201 aaaaaaattgatccatttcacttttcaatacaatatta 8498238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 438 - 528
Target Start/End: Original strand, 1876 - 1966
Alignment:
Q  438 atgcctgctacattgtcagttgattttgctagagacagacatgggctacctagctttagatttccgtagcctgttctagtcatttattttt 528  Q
    ||||| ||| ||||||||| ||||||| ||||||||||| ||||||| ||||  ||||||||  | |||||  |||||||| ||| |||||    
T  1876 atgccagcttcattgtcagatgattttactagagacagaaatgggcttcctaattttagattctcttagccatttctagtctttttttttt 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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