View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961-Insertion-10 (Length: 477)
Name: NF2961-Insertion-10
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Complemental strand, 3501629 - 3501188
Alignment:
| Q |
8 |
ctacctgcatttgttcatgatcaaaatgtacatgctttagatgtccaatcctaagcacaagagggtgtgttgagttccaaagttgattagagatatattg |
107 |
Q |
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| T |
3501629 |
ctacctgcgtttgttcatgatcaaaatgtacatgctttagatgtccaatcctaagcacaagagggtgtgttgagttccaaagttgattagagatatatag |
3501530 |
T |
|
| Q |
108 |
cttcggtagttttttaagattcaagcaattcttgtcttacaagccaatttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttga |
207 |
Q |
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| T |
3501529 |
cttcggtatttttttaagattcaagcaattcttgtcttacaagccaatttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttga |
3501430 |
T |
|
| Q |
208 |
tgaaagatttaatagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgatta |
307 |
Q |
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| T |
3501429 |
tgaaagatttaagagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgatta |
3501330 |
T |
|
| Q |
308 |
atttctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaatcgaaaattttaatcttgatcgtttactttgatctacggttaatatt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
3501329 |
atttctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaatcgaaaattttaatcttgatcgtttattttgatctatggttaatatt |
3501230 |
T |
|
| Q |
408 |
atatcttcccatttcttagattgattcacacctctcacttga |
449 |
Q |
| |
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| T |
3501229 |
atatcctcccatttcttagattgattcacacctctcacttga |
3501188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 112 - 449
Target Start/End: Complemental strand, 3513846 - 3513516
Alignment:
| Q |
112 |
ggtagttt-tttaagattcaagcaattcttgtcttacaagccaat--ttttaggttgagttaggcgtaaaatataatagtttgtataatggatagttgat |
208 |
Q |
| |
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| T |
3513846 |
ggtagtttctttaagattcaagcaattcttgccttacaagcaaatctttttaggttgagttaggcgcaaaatctaatagtttgtataatcgagagtt--- |
3513750 |
T |
|
| Q |
209 |
gaaagatttaatagaaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaagaagattcaattgattaa |
308 |
Q |
| |
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| T |
3513749 |
--aagagc------aagatgattgactagattgggataattttggggctccattgcatttaagaatttatggatgaattcaataagatttgattgattaa |
3513658 |
T |
|
| Q |
309 |
tttctaaaactttctctattacatgcgtgaacaatgattgtgttcctttt-aatcgaaaattttaatcttgatcgtttactttgatctacggttaatatt |
407 |
Q |
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| T |
3513657 |
tttctaaaactttctctattacatgcgtgaacaatgattgtgttccttttaaattgaaaattttaatcttgatcgtttattttgatctacggttaatatt |
3513558 |
T |
|
| Q |
408 |
atatcttcccatttcttagattgattcacacctctcacttga |
449 |
Q |
| |
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| T |
3513557 |
atatcctcccatttcttacattgactcacacctctcacttga |
3513516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 193 - 449
Target Start/End: Complemental strand, 2357188 - 2356930
Alignment:
| Q |
193 |
ataatggatagttgatgaaagatttaatag-aaaataattgactagattgggat-attttggaggttacattgcattaaagaatttatggacgagttcaa |
290 |
Q |
| |
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||||| |||||| |||| ||||||||| || ||||||||||||||||||| ||| ||||||| ||| |||| |||| |||||||| |||| || ||||| |
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| T |
2357188 |
ataatcgatagtggatgcaagatttaagagcaaaataattgactagattgagatgattttgggggtc-cattacatttaagaatttgtggatgaattcaa |
2357090 |
T |
|
| Q |
291 |
gaagattcaattgattaatttctaaaactttctctattacatgcgtgaacaatgattgtgttcc-ttttaatcgaaaattttaatcttgatcgtttactt |
389 |
Q |
| |
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||||||| |||||||||||||| |||||||||| |||||||| |||||||||||| ||| || ||||| | |||| | |||| ||||| ||||| || |
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| T |
2357089 |
gaagatttgattgattaatttcttaaactttctcaattacatgtgtgaacaatgatcatgtgcctttttagtttaaaactgtaatgttgattgtttattt |
2356990 |
T |
|
| Q |
390 |
tgatctacggttaatattatatcttcccatttcttagattgattcacacctctcacttga |
449 |
Q |
| |
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||||||||||||||||||||||| |||||| | ||| |||| |||| |||||||||||| |
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| T |
2356989 |
tgatctacggttaatattatatcctcccatgtattacattgtctcacgcctctcacttga |
2356930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 193 - 447
Target Start/End: Original strand, 2352244 - 2352498
Alignment:
| Q |
193 |
ataatggatagttgatgaaagatttaatag-aaaataattgactagattgggatattttggaggttacattgcattaaagaatttatggacgagttcaag |
291 |
Q |
| |
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||||| |||||| |||| ||||||||| || ||||||||| ||||||||| |||| ||| | |||| |||| |||| |||||||| |||| || |||||| |
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| T |
2352244 |
ataatcgatagtggatgcaagatttaagagcaaaataattaactagattgagataattttggggtt-cattacatttaagaatttgtggatgaattcaag |
2352342 |
T |
|
| Q |
292 |
aagattcaattgattaatttctaaaactttctctattacatgcgtgaacaatgattgtgttcc-ttttaatcgaaaattttaatcttgatcgtttacttt |
390 |
Q |
| |
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|||||| |||||||||||||| |||||||| | |||||||| |||||||||||| ||| || ||||| | ||||| | |||| ||||||||||| ||| |
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| T |
2352343 |
aagatttgattgattaatttctcaaactttcacaattacatgtgtgaacaatgatcatgtgcctttttagttgaaaactgtaatgttgatcgttta-ttt |
2352441 |
T |
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| Q |
391 |
gatctacggttaatattatatcttcccatttcttagattgattcacacctctcactt |
447 |
Q |
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|||||| ||||||||||||||| |||||||| ||| ||| |||| |||||||||| |
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| T |
2352442 |
gatctaaggttaatattatatcctcccatttattacattatctcacgcctctcactt |
2352498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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