View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961-Insertion-11 (Length: 437)
Name: NF2961-Insertion-11
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 46744709 - 46744429
Alignment:
| Q |
7 |
agtaagcatggtatttcacatagcatagcagtctatttaattaactagaggtacaaaaataatccaaacatgcccagctacgatattatatactataccc |
106 |
Q |
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| T |
46744709 |
agtaagcatggtatttcacatagcatagcagtctatttaattaactagaggtacaaaaataatccaaacatgcccagctacgatattatatactataccc |
46744610 |
T |
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| Q |
107 |
gagattccatcctaatgaagtaatatatatatgcttcaactctcaatacaaattcttaattaaccaaaaatagaaaagaagataaatcttgatatagctg |
206 |
Q |
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| T |
46744609 |
gagattccattctaatgaagtaatatatatatgcttcaactctcaatacaaattcttaattaaccaaaaatagaaaagaagataaatcttgatatagctg |
46744510 |
T |
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| Q |
207 |
tannnnnnnatatattgtatttatttaggttccatgaaaagagcaaggatagaattaaagcaagaattttgttaacttgtat |
288 |
Q |
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| T |
46744509 |
tatttttatatatattgtatttatttaggttccatgaaaag-gcaaggatagaattaaagcaagaattttgttatcttgtat |
46744429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 46744346 - 46744280
Alignment:
| Q |
371 |
ccaacttttaagatgaatatttatatattgagcttgttaatatgtgtctttgagacgtaagttagca |
437 |
Q |
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| T |
46744346 |
ccaacttttaagatgaatatttatatattgagcttgttaatatgtatctttgagacgtaagttagca |
46744280 |
T |
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