View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961-Insertion-2 (Length: 900)
Name: NF2961-Insertion-2
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 804; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 804; E-Value: 0
Query Start/End: Original strand, 7 - 900
Target Start/End: Complemental strand, 39054903 - 39054010
Alignment:
| Q |
7 |
agtcttttccctgcagactctaacctgcaacaaatttcaaaattccagtagaggtataacatttagtggatggggcatgtaaagagttatatactgaaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39054903 |
agtcttttccctgcagactctaacctgcaacaaatttcaaaattccagtagaggtataacatttagtggatggggcatgtaaagaattatatactgaaaa |
39054804 |
T |
|
| Q |
107 |
agagtagttgattgcatcatatacctccccaaatgcaccttttccaatcatagttaacatctcaaaatcctcaacacccattttatgcctttgaagacgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39054803 |
agagtagttgattgcatcatatacctccccaaatgcaccttttccaatcatagttaacatctcaaaatcctcaacacccattttatgcctttgaagacgc |
39054704 |
T |
|
| Q |
207 |
atatattcggtttccttcttcgctaaatatttaagtaggttattttgatcttcctcggagacatcagcatcagccaacttcttttctaagacagttcgac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39054703 |
atatattcggtttccttcttcgctaaatatttaagtaagttattttgatcttcctcggagacatcagcatcagccaacttcttttctaagacagttcgac |
39054604 |
T |
|
| Q |
307 |
tgttacaagtgagatattagaaaactctgcaacatacttgaacacaatatagaataaaattcaagcacatacaaaacttttggcagttttaacatactgt |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39054603 |
tgttacaagtgaggtattagaaaactctgcaacatacttgaacacaatatagaataaaattcaagcacatacaaaacttttggcagttttaacacactgt |
39054504 |
T |
|
| Q |
407 |
gtaaaaaatataatgcagtaaaggaaatatacaactcttacactaaaaaatatataatgggtatgaattatgtcttaaataaagttcaagttgatatcaa |
506 |
Q |
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| T |
39054503 |
gtaaaaaatataatgcagtaaaggaaatatacaactcttacactaaaaaatatataatgggtatgaattatgtcttaaataaagttcaagttgatatcaa |
39054404 |
T |
|
| Q |
507 |
tcaatagtatcagctatnnnnnnnnnttgaagataaggaaataagaatctcatgaaatttcacaaaaatatatgtaggagtaaagagtgatatttcccta |
606 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
39054403 |
tcaatagtatcagctat--aaaaaaattgaagataaggaaataagaatctcatgaaatttcacaaaaatctatgcaggagtaaagagtgatatttcccta |
39054306 |
T |
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| Q |
607 |
attataatgatttcattgtatgaaaaataagagaggttataaatttagtgtgcatttggctatgcagtgacacaacctgattttgaatgaattca-tttt |
705 |
Q |
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| T |
39054305 |
attataatgatttcattgtatgaaaaataagagaggttataaatttagtgtgcatttggctatgcggtgacacaacctgattttgaatgaattcattttt |
39054206 |
T |
|
| Q |
706 |
gtaaaattgatttatatttagatacattaatatgaaagaagattgaacgttaactttaaggttaaagtcaattctagaagccaaaagctactagcttcga |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39054205 |
gtaaaattgatttatatttagatacattaatatgaaagaagattgaacgttaactttaaggctaaagtcaattctagaagccaaaagctactagcttcga |
39054106 |
T |
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| Q |
806 |
gttagaatcaattccagagacaaaatcaattctaaacccctagaaacaattttgactcat-aaaaatgaaaccaaacatactaatccgtcacattg |
900 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
39054105 |
gttagaatcaattctagagacaaaatcaattctaaacctctagaaacaattttgactcataaaaaatgaaacgaaacatactaatccgtcacattg |
39054010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 30395297 - 30395480
Alignment:
| Q |
127 |
atacctccccaaatgcaccttttccaatcatagttaacatctcaaaatcctcaacacccattttatgcctttgaagacgcatatattcggtttccttctt |
226 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||| || || ||||| |||||||||||||||||||| || |
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| T |
30395297 |
atacctccccaaatgcaccttttccaatcatagtcaataactcaaaatcatcaacacccatcttggctctctgaaggcgcatatattcggtttccttttt |
30395396 |
T |
|
| Q |
227 |
cgctaaatatttaagtaggttattttgatcttcctcggagacatcagcatcagccaacttcttttctaagacagttcgactgtt |
310 |
Q |
| |
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| ||||| ||||||||| ||| ||||||||||| |||||||| || ||||| |||||||||||||| |||| ||||||||||| |
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| T |
30395397 |
ctctaaaaatttaagtaagttgttttgatcttcttcggagacctcggcatcggccaacttcttttccaagatggttcgactgtt |
30395480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 294
Target Start/End: Original strand, 33638138 - 33638304
Alignment:
| Q |
128 |
tacctccccaaatgcaccttttccaatcatagttaacatctcaaaatcctcaacacccattttatgcctttgaagacgcatatattcggtttccttcttc |
227 |
Q |
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|||||| ||||||||||| || || ||||| || | | ||||||||| ||| | ||||| |||||||| ||||| ||||| ||||| | ||||| ||| |
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| T |
33638138 |
tacctctccaaatgcacccttccctatcatggtgagaagctcaaaatcatcagcccccatcttatgcctctgaagtcgcatgtattccctctcctttttc |
33638237 |
T |
|
| Q |
228 |
gctaaatatttaagtaggttattttgatcttcctcggagacatcagcatcagccaacttcttttcta |
294 |
Q |
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| T |
33638238 |
tcaaaatacttaagcaggttgttctgctcttcctcagagacttcagaatcagccagctttttttcta |
33638304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 797 - 842
Target Start/End: Complemental strand, 35775698 - 35775653
Alignment:
| Q |
797 |
tagcttcgagttagaatcaattccagagacaaaatcaattctaaac |
842 |
Q |
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||||||| ||||||||||||||| ||||||||| |||||||||||| |
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| T |
35775698 |
tagcttcaagttagaatcaattctagagacaaattcaattctaaac |
35775653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 719
Target Start/End: Complemental strand, 49158689 - 49158654
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattta |
719 |
Q |
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| T |
49158689 |
tgattttgaatgaattgattttgtaaaattgattta |
49158654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Complemental strand, 30958206 - 30958172
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattt |
718 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
30958206 |
tgattttgaatgaattgattttgtaaaattgattt |
30958172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Complemental strand, 30974018 - 30973984
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattt |
718 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
30974018 |
tgattttgaatgaattgattttgtaaaattgattt |
30973984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 839
Target Start/End: Complemental strand, 29922669 - 29922603
Alignment:
| Q |
773 |
tcaattctagaagccaaaagctactagcttcgagttagaatcaattccagagacaaaatcaattcta |
839 |
Q |
| |
|
|||||||| ||||||||||| | || ||||| ||||| ||||||||| ||| |||||||||||||| |
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|
| T |
29922669 |
tcaattctggaagccaaaagattctggcttcaagttaaaatcaattcttgaggcaaaatcaattcta |
29922603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Original strand, 38740290 - 38740324
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattt |
718 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
38740290 |
tgattttgaatgaattgattttgtaaaattgattt |
38740324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Complemental strand, 7630574 - 7630540
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattt |
718 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |
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| T |
7630574 |
tgattttgaatgaattgattttgtaaaattgattt |
7630540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 718
Target Start/End: Complemental strand, 13238971 - 13238937
Alignment:
| Q |
684 |
tgattttgaatgaattcattttgtaaaattgattt |
718 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |
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| T |
13238971 |
tgattttgattgaattcattttgtaaaattgattt |
13238937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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