View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961-Insertion-3 (Length: 810)

Name: NF2961-Insertion-3
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961-Insertion-3
NF2961-Insertion-3
[»] chr7 (3 HSPs)
chr7 (403-810)||(46892136-46892543)
chr7 (70-297)||(46891814-46892030)
chr7 (8-60)||(46886104-46886156)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 403 - 810
Target Start/End: Original strand, 46892136 - 46892543
Alignment:
Q  403 gcactccacaacctcatcctctccatcctctccctcattatggctattggcacctccctcaccatcctaacccacacccccaacctccgctccaccacca 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46892136 gcactccacaacctcatcctctccatcctctccctcattatggctattggcacctccctcaccatcctaactcacacccccaacctccgctccaccacca 46892235  T
Q  503 tctgtttccctcctcatacccctccaaatggtcccctcttcttttgggcctacatcttctacctctcaaaatatcttgaattcattgacactctcttcat 602  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46892236 tatgtttccctcctcatacccctccaaatggtcccctcttcttttgggcctacatcttctacctctcaaaatatcttgaattcattgacactctcttcat 46892335  T
Q  603 aatcctatcaagatccatcaaacgcctctcattcctccacgtgtaccatcattcaaccgtcccagtcatgtgttatctatggcttaattcttctcaatca 702  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46892336 catcctatcaagatccatcaaacgcctctcattcctccacgtgtaccatcattcaaccgtcccagtcatgtgttatctatggcttaattcttctcaatca 46892435  T
Q  703 ctcttccctattgcacttcttaccaactcatccgtccacgtcatcatgtactcttactacttcctcaccaccgttggtatccgaccgccttggaaacgcg 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46892436 ctcttccctattgcacttcttaccaactcatccgtccacgtcatcatgtactcttactacttcctcaccaccgttggaatccgaccgccttggaaacgcg 46892535  T
Q  803 tcgttacc 810  Q
    ||||||||    
T  46892536 tcgttacc 46892543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 70 - 297
Target Start/End: Original strand, 46891814 - 46892030
Alignment:
Q  70 ttgttttttgaagagaaaaaatagtaacatatatggtacttaatacgtagacaacacaaagtgtccaatagcatcaggaagaacacgaacacaaacaaag 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||    
T  46891814 ttgttttttgaagagaaaaaatagtaacatatatggtacttaatacgtagacaacacaaagtgtccaatagcatcaggaagaacac----------aaag 46891903  T
Q  170 gcacttctcccccaaacccaaaaaagaggttaatggaaaaccccattggcagaatccttgaacattggctagtctaccatccaaacattctaaatttcac 269  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46891904 gcacttctcccccaaacccaaaaa-gaggtgaatggaaaaccccattggcagaatccttgaacattggctagtctaccatccaaacattctaaatttcac 46892002  T
Q  270 atggaaccctcctcacactccagcctca 297  Q
    ||||||||||||||||||||||||||||    
T  46892003 atggaaccctcctcacactccagcctca 46892030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 46886104 - 46886156
Alignment:
Q  8 acatttagatttagttttctatgatttacttattgttcttctagtaagttata 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46886104 acatttagatttagttttctatgatttacttattgttcttctagtaagttata 46886156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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