View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961-Insertion-4 (Length: 810)

Name: NF2961-Insertion-4
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961-Insertion-4
NF2961-Insertion-4
[»] chr4 (8 HSPs)
chr4 (8-260)||(2565653-2565906)
chr4 (489-737)||(2565927-2566175)
chr4 (64-119)||(56532388-56532443)
chr4 (594-650)||(43429325-43429381)
chr4 (755-810)||(2566175-2566230)
chr4 (594-650)||(21438386-21438442)
chr4 (594-650)||(51206853-51206909)
chr4 (673-712)||(1757358-1757397)
[»] chr7 (3 HSPs)
chr7 (661-767)||(24007376-24007482)
chr7 (675-712)||(7792353-7792390)
chr7 (659-712)||(33618193-33618246)
[»] chr2 (4 HSPs)
chr2 (594-650)||(6256953-6257009)
chr2 (594-650)||(12328773-12328829)
chr2 (659-712)||(43871378-43871431)
chr2 (678-712)||(9171577-9171611)
[»] chr1 (2 HSPs)
chr1 (594-650)||(4437186-4437242)
chr1 (594-650)||(25668984-25669040)
[»] chr3 (3 HSPs)
chr3 (659-712)||(51390518-51390571)
chr3 (594-650)||(54523246-54523302)
chr3 (675-749)||(34848184-34848258)
[»] chr5 (1 HSPs)
chr5 (659-712)||(25595424-25595477)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 2565653 - 2565906
Alignment:
Q  8 atatgaaagagaattttgaggtaaagtttaacagattacgaaggccaatttaagaggttgatcgtgatggaagaaaaattggagtttgattatgaaggcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565653 atatgaaagagaattttgaggtaaagtttaacagattacgaaggccaatttaagaggttgatcgtgatggaagaaaaattggagtttgattatgaaggcc 2565752  T
Q  108 aacaagatatttcatttagaataggctcatgtgtaggcaattcaatgtaatttatttcttgaatttgtgatggccattcacatatttgtaaaagaaaatt 207  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565753 aacaagatatttcatttagaataggctcacgtgtaggcaattcaatgtaatttatttcttgaatttgtgatggccattcacatatttgtaaaagaaaatt 2565852  T
Q  208 ctatattat-atcaaatgaaatgagatgaaattttatagtatgtgttcaagcaa 260  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2565853 ctatattatcatcaaatgaaatgagatgaaattttatagtatgtgttcaagcaa 2565906  T

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Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 489 - 737
Target Start/End: Original strand, 2565927 - 2566175
Alignment:
Q  489 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565927 tatctaacaaaactatcaaagcattgatttaagttactgatacaaaacatagagtgccacttgaattaagaaactagactttcaaatcatatcataaatt 2566026  T
Q  589 catggttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattctaattaaaactacatcatgttgatgttgattacatcgtt 688  Q
    |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2566027 catgcttctatgttattcatcttgtttgtctaacttccttcatccgccttctacgtcattctaattaaaactacatcatgttaatgttgattacatcgtt 2566126  T
Q  689 attgttccgttactttattatcctcattactatcactgcttcatacatc 737  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2566127 attgtttcgttactttattatcctcattactatcactgcttcatacatc 2566175  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 56532388 - 56532443
Alignment:
Q  64 gttgatcgtgatggaagaaaaattggagtttgattatgaaggccaacaagatattt 119  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  56532388 gttgatcatgatggaagaaaaattggagcttgattatgaaggccagcaagatattt 56532443  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 43429381 - 43429325
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  43429381 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgtcattct 43429325  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 755 - 810
Target Start/End: Original strand, 2566175 - 2566230
Alignment:
Q  755 ctgtttatatcatatgtaattgatggacaatttttagatggattgatcaaactgta 810  Q
    ||||||| |||||||  || ||||||||||||||||||||||||||||||||||||    
T  2566175 ctgtttacatcatatacaaatgatggacaatttttagatggattgatcaaactgta 2566230  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Original strand, 21438386 - 21438442
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  21438386 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 21438442  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 51206909 - 51206853
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||||| | ||||||    
T  51206909 ttctatgttattcatctggtttgtctaacttccttcatcctttttctatgccattct 51206853  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 712
Target Start/End: Original strand, 1757358 - 1757397
Alignment:
Q  673 tgttgattacatcgttattgttccgttactttattatcct 712  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  1757358 tgttgattacatcgttattgtttcgttagtttattatcct 1757397  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 661 - 767
Target Start/End: Original strand, 24007376 - 24007482
Alignment:
Q  661 acatcatgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttcaatagcctgttt 760  Q
    ||||| ||||| | ||||||||||| |||||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||| |||||| | | |||||||    
T  24007376 acatcgtgttgttattgattacatctttattgtttcattattttattatccttattgctatcactgcttcatatatcgttattgtttcgacaacctgttt 24007475  T
Q  761 atatcat 767  Q
    | |||||    
T  24007476 acatcat 24007482  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 712
Target Start/End: Original strand, 7792353 - 7792390
Alignment:
Q  675 ttgattacatcgttattgttccgttactttattatcct 712  Q
    |||||||||||||||||||| |||||||||||||||||    
T  7792353 ttgattacatcgttattgtttcgttactttattatcct 7792390  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 712
Target Start/End: Complemental strand, 33618246 - 33618193
Alignment:
Q  659 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 712  Q
    ||||||| ||||| | | |||||||||||||||||| | |||||||||||||||    
T  33618246 ctacatcgtgttgttatcgattacatcgttattgtttctttactttattatcct 33618193  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Original strand, 6256953 - 6257009
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  6256953 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 6257009  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Original strand, 12328773 - 12328829
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  12328773 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 12328829  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 712
Target Start/End: Original strand, 43871378 - 43871431
Alignment:
Q  659 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 712  Q
    ||||||||||||| | | |||||||||||||||||| |||| ||||||||||||    
T  43871378 ctacatcatgttgttatagattacatcgttattgtttcgttgctttattatcct 43871431  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 678 - 712
Target Start/End: Original strand, 9171577 - 9171611
Alignment:
Q  678 attacatcgttattgttccgttactttattatcct 712  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171577 attacatcgttattgtttcgttactttattatcct 9171611  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 4437242 - 4437186
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  4437242 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 4437186  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 25669040 - 25668984
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  25669040 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 25668984  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 712
Target Start/End: Complemental strand, 51390571 - 51390518
Alignment:
Q  659 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 712  Q
    ||||||||||||| | | ||||||||||| |||||| |||||||||||||||||    
T  51390571 ctacatcatgttgttatcgattacatcgtcattgtttcgttactttattatcct 51390518  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 54523302 - 54523246
Alignment:
Q  594 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 650  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||| | ||||||    
T  54523302 ttctatgttattcatctggtttgtctaactttcttcatccttcttctatgccattct 54523246  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 749
Target Start/End: Complemental strand, 34848258 - 34848184
Alignment:
Q  675 ttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttca 749  Q
    ||||||||||  ||||||||  |||||||||||| ||| |||  ||||||| |||||||||| |||| |||||||    
T  34848258 ttgattacattattattgttttgttactttattaaccttattgttatcactccttcatacattgttactgtttca 34848184  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 712
Target Start/End: Original strand, 25595424 - 25595477
Alignment:
Q  659 ctacatcatgttgatgttgattacatcgttattgttccgttactttattatcct 712  Q
    ||||||| ||||||| | |||||||||||||||||| | ||||| |||||||||    
T  25595424 ctacatcgtgttgatatcgattacatcgttattgtttctttactctattatcct 25595477  T

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