View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961-Insertion-6 (Length: 766)
Name: NF2961-Insertion-6
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961-Insertion-6 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 7 - 766
Target Start/End: Complemental strand, 27006116 - 27005372
Alignment:
| Q |
7 |
aagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatg |
106 |
Q |
| |
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|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27006116 |
aagaacactactatccatttaacaaaccaatgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattacg |
27006017 |
T |
|
| Q |
107 |
atgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtat |
206 |
Q |
| |
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||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27006016 |
atgctatagatgaatctgaagaaaaagttcaaatcagcgaggtttcttctaa---------------agaagaagtgaaggaactggttgagcagagtat |
27005932 |
T |
|
| Q |
207 |
atggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttggt |
306 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
27005931 |
atggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgatacagctgttgttggt |
27005832 |
T |
|
| Q |
307 |
caaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgtttt |
406 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||| ||||||| ||||| |
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|
| T |
27005831 |
caaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattgactgtttaattcttgaaattccgcaataatgtgaatttcgtttt |
27005732 |
T |
|
| Q |
407 |
cttcatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgc |
506 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27005731 |
ctacatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgc |
27005632 |
T |
|
| Q |
507 |
taagcaggtttgnnnnnnnatgccccttttttaattggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggtt |
606 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27005631 |
taagcaggtttgtttttttaggccccttttttaattggaaagaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggtt |
27005532 |
T |
|
| Q |
607 |
agtctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttca |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27005531 |
agtctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttca |
27005432 |
T |
|
| Q |
707 |
gtcttttgttgttcctgattattaactagttgttgctccctgtgttttgggggctctcca |
766 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
27005431 |
gtcttttgttgttcctgattattaacttgttgttgctccctgtgtttcgggggctctcca |
27005372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 7 - 764
Target Start/End: Complemental strand, 26991685 - 26990942
Alignment:
| Q |
7 |
aagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991685 |
aagaacactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatg |
26991586 |
T |
|
| Q |
107 |
atgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26991585 |
atgtcgcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaactggttgagcagagtat |
26991486 |
T |
|
| Q |
207 |
atggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttggt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26991485 |
atggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttggt |
26991386 |
T |
|
| Q |
307 |
caaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgtttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26991385 |
caaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcccaataatttgaattttgtttt |
26991286 |
T |
|
| Q |
407 |
cttcatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26991285 |
cttcatgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgc |
26991186 |
T |
|
| Q |
507 |
taagcaggtttgnnnnnnnatgccccttttttaattg--gaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtgg |
604 |
Q |
| |
|
||| |||||||| ||||||| | | | ||||||| ||||||||| || |||||||| |||| ||||||||||||||||||||| |
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|
| T |
26991185 |
taaacaggtttg--------------ttttttattcgcatatagaaaattttgatgaatgtg--tttgtgaatgggtatcttgtattcaaatgtgagtgg |
26991102 |
T |
|
| Q |
605 |
ttagtctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgttt |
704 |
Q |
| |
|
|||||||||||| |||||| ||| || ||||||||||||||||| | |||| |||||||||| ||||| ||| ||||||| ||||||||||| |||||| |
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|
| T |
26991101 |
ttagtctcacaccggttgaggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttt |
26991002 |
T |
|
| Q |
705 |
cagtcttttgttgttcctgatt-attaactagttgttgctccctgtgttttgggggctctc |
764 |
Q |
| |
|
||| ||||| |||| ||||| ||| || |||||||||||| |||||||||| ||||| |
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|
| T |
26991001 |
tggtc-tttgtagttcatgattggttaccttattgttgctccctatgttttggggactctc |
26990942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 516
Target Start/End: Original strand, 26975786 - 26976283
Alignment:
| Q |
12 |
cactactatccatccaacaagccagtgcattattacatcctcgagccagaaccgtcgcttcgagtttctaacagcttgctcagttcaaaattatgatgtc |
111 |
Q |
| |
|
|||| |||||||| | |||| ||| |||||||| |||||||||||| |||||||||||||| ||| |||||| || || | |||||||| | || ||| |
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|
| T |
26975786 |
cactgctatccattccacaaaccaacgcattatttcatcctcgagccggaaccgtcgcttcgggttcctaacacctcgcgtacttcaaaatcaagaagtc |
26975885 |
T |
|
| Q |
112 |
gcagatgagtctgaagaaaaagatcaaatcagcgaggtttcttctaaggaacaagcacaagaagaagaagtgaaggaact---ggttgagcagagtatat |
208 |
Q |
| |
|
||| | || || ||| | |||| ||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
26975886 |
gcaaacgaatccgaacaccaagaacaaatcagccaggtttcttctaaagaa---------gaagaagaagtgaaggaactactggttgagcaaagtatat |
26975976 |
T |
|
| Q |
209 |
ggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttggtca |
308 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26975977 |
ggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgataccgctgttgttggtca |
26976076 |
T |
|
| Q |
309 |
aggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgttttct |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
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|
| T |
26976077 |
aggaagttcaattgaacttgctgctttaggtatttttatgattttatcacattcactgtttaatt-ttgaaattccgcaataatgtgaattttgttttct |
26976175 |
T |
|
| Q |
409 |
tcatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgcta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
26976176 |
acatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgcta |
26976275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 203 - 342
Target Start/End: Complemental strand, 26946612 - 26946473
Alignment:
| Q |
203 |
gtatatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgt |
302 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| | |||||||| ||| |||||| |||| ||||||||||||||| | || |||||||||||| | |
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|
| T |
26946612 |
gtatatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttat |
26946513 |
T |
|
| Q |
303 |
tggtcaaggaagttcgattgaacttgctgctttaggtatt |
342 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||| |
|
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| T |
26946512 |
tggtcagggaagttcaattgagcttgctgctttaggtatt |
26946473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 540 - 719
Target Start/End: Original strand, 26976628 - 26976802
Alignment:
| Q |
540 |
attggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaa |
639 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| ||||| ||| | | |||||| | |||||| |||||| |||| | | ||| |||| |||||| ||| |
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| T |
26976628 |
attggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagtcccacattggctgataatgagctaaattaa |
26976727 |
T |
|
| Q |
640 |
tgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgtttcagtcttttgttgtt |
719 |
Q |
| |
|
||||||||||||||| || ||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |||| |
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| T |
26976728 |
tgatatagaagagaggcgactcatatgtctaatgttctaaggt-----gtggaaatgtggtgttttagtcttttgctgtt |
26976802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 26954337 - 26954273
Alignment:
| Q |
277 |
atgagtctcattgatactgctgttgttggtcaaggaagttcgattgaacttgctgctttaggtat |
341 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||| | || ||||||||||||||||| |
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|
| T |
26954337 |
atgagcctcatagatactgctgttgttggtcagggaagttcaaccgagcttgctgctttaggtat |
26954273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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