View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961-Insertion-8 (Length: 748)

Name: NF2961-Insertion-8
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961-Insertion-8
NF2961-Insertion-8
[»] chr5 (1 HSPs)
chr5 (7-748)||(34593427-34594169)


Alignment Details
Target: chr5 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 7 - 748
Target Start/End: Complemental strand, 34594169 - 34593427
Alignment:
Q  7 acattggacactgtgtattcttataattataactttaatgacttctttttta-gttctattttcttttgggttgtcaatgaaaaaatatataaaaattgg 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34594169 acattggacactgtgtattcttataattataactttaataacttcttttttttgttctattttcttttgggttgttaatgaaaaaatatataaaaattgg 34594070  T
Q  106 tttgtcattgatatgctgtgattttgcaactgggttgttttttataaagtttttcttggtaggttaaaagggaaatgccatttgccacgaaatatggatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594069 tttgtcattgatatgctgtgattttgcaactgggttgttttttataaagtttttcttggtaggttaaaagggaaatgccatttgccacgaaatatggatt 34593970  T
Q  206 cagggggaaacacaaataactcacacatgaccttgtttttcaccaaatgacnnnnnnn-atcatgtatttattgataatatttgtggtagtaaccatcag 304  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||| ||    
T  34593969 cagggggaaacacaaataacacacacatgaccttgttttccaccaaatgacttttttttatcatgtatttattgataatatttgtggtagtaaccattag 34593870  T
Q  305 tctatcgtggttctcgttttgttggtagttgtaggaaatagcatcgttgtatttaaaatgttgtcaagttgggagatgcaaatggggggttttcccaaat 404  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  34593869 tctatcgtggttctcgttttgttggtagttgtaggaaatggcatcgttgtatttaaaatgttgtcaagttgggagatgcaaatgggg--ttttcccaaat 34593772  T
Q  405 accggccgctgttttttgacaatcataattctctctgttgtgttcccttttctttc-ggggatgttttgggttgtctgtagcactgacacttgtgattga 503  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||    
T  34593771 accggccgctgttttatgacaatcataattctctctgttgtgttcccttttttttccggggatgttttgggttgtctgtagcactgacacttgtgatcga 34593672  T
Q  504 aggtctgtcagtgtcgtgtttggtgtcgatgacagtgcttcatagtttattgatatgctgtgattttgcaattggcatccatatttattgtgttattatt 603  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593671 aggtctgtcagtgtcgtgtttggtgtcggtgacagtgcttcatagtttattgatatgctgtgattttgcaattggcatccatatttattgtgttattatt 34593572  T
Q  604 gtacagtttcaagcaaagaagagtttgatgctccggagagttttatcatcaatcctgtggatttgaatagctatttcgatgatgatgggaaaatttatgg 703  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593571 gtacagtttcaagcaaagaagagtttgatgctccagagagttttatcatcaatcctgtggatttgaatagctatttcgatgatgatgggaaaatttatgg 34593472  T
Q  704 ctatgaaggtttgaaggtctgattcattttaactatagtatgaga 748  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  34593471 ctatgagggtttgaaggtctgattcattttaactatagtatgaga 34593427  T

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