View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961-Insertion-9 (Length: 796)
Name: NF2961-Insertion-9
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961-Insertion-9 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 332 - 696
Target Start/End: Complemental strand, 27511502 - 27511138
Alignment:
| Q |
332 |
gctgtgtttgatctgttcatgaaacaagttgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
431 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511502 |
gctgtgtttgatctgttcatgaatcaagtcgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
27511403 |
T |
|
| Q |
432 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatc |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
27511402 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcgagagaggtggtcgtgaatc |
27511303 |
T |
|
| Q |
532 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511302 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
27511203 |
T |
|
| Q |
632 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511202 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
27511138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 27511820 - 27511565
Alignment:
| Q |
8 |
ccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511820 |
ccaatctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgt |
27511721 |
T |
|
| Q |
108 |
cttgtctgtccttcgcccctcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27511720 |
cttgtctgtccttcgcccctcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgct |
27511621 |
T |
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| Q |
208 |
gacactaaccgcaatggtcttgtctcaggtagatgttatatatcgcccattctaatcttc |
267 |
Q |
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| T |
27511620 |
gacactaaccgcaatggtcttgtctcaggtagatgt----tatcgcccattctaatcttc |
27511565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 170; Significance: 8e-91; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 382 - 711
Target Start/End: Original strand, 77779 - 78094
Alignment:
| Q |
382 |
tcgaatcattcaaagccgctaccattggagagagacagaggattatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaac |
481 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
77779 |
tcgaatcattcaaagccgctaacgttggagagagacag--gattatatgcttatacgtatgtatatgcctggacgcattaaggaagatgtg--------- |
77867 |
T |
|
| Q |
482 |
gtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagatta |
581 |
Q |
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|||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||| | ||||||||| |||| |||||||||||| || |||||| |
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| T |
77868 |
---tatcagaacactcttagcattaaaggtgagcgaggtggtcgtaaatcctctagcagacttgatttaaccgggaaacattacaagatttattagatta |
77964 |
T |
|
| Q |
582 |
gagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaa |
681 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| |
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| T |
77965 |
cagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaaggatggggaaactacagagggaaggaacaacaatgatgtgattattgtcaa |
78064 |
T |
|
| Q |
682 |
ggttgaatagaagaatatggtattttcatt |
711 |
Q |
| |
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||||||||||||||||||||| |||||||| |
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| T |
78065 |
ggttgaatagaagaatatggtcttttcatt |
78094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 77342 - 77589
Alignment:
| Q |
12 |
tctcatctcaaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcg-tctt |
110 |
Q |
| |
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|||||| ||||||| |||||||| |||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| | ||||| | |||| |
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| T |
77342 |
tctcatatcaaagtatttccttcaccccattgccatctcttctataacagtctcctcccccggtctcatctcaaagtcttatcttcatcccatgggtctt |
77441 |
T |
|
| Q |
111 |
gtctgtccttcgcccc------------tcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcct |
198 |
Q |
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|||||| |||| ||| || ||||||||||| |||||||||||||||||| | ||||| ||||| ||||| ||| | ||||||||| |
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| T |
77442 |
ttctgtcattcgtcccgtcgctagttcctcctaccgctatttcaaagccaatccccatctcctaagccctgtcgcctcttttgatatcaatggcatgccc |
77541 |
T |
|
| Q |
199 |
cagaacgctgacactaaccgcaatggtcttgtctcaggtagatgttat |
246 |
Q |
| |
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|| ||||| |||||| |||||||||||||||| |||||||||| |||| |
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| T |
77542 |
caaaacgcggacactcaccgcaatggtcttgtatcaggtagatcttat |
77589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 444 - 632
Target Start/End: Complemental strand, 33702465 - 33702282
Alignment:
| Q |
444 |
atatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgca |
543 |
Q |
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||||||||| |||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||| ||||||| ||||||||||||| | |
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| T |
33702465 |
atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgtaaca-----ctcttagcattaaaggcgagagaggtggtcgtaaatcctcttgcacact |
33702371 |
T |
|
| Q |
544 |
tgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaagg |
632 |
Q |
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||||||||| |||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33702370 |
tgatttaacagggaaatcttacaagattgatcagattagagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaagg |
33702282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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