View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961R-Insertion-1 (Length: 990)
Name: NF2961R-Insertion-1
Description: NF2961R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-170; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 34983122 - 34982723
Alignment:
| Q |
8 |
aatattcttcttgaagacatatgcgcaccaccaaactaaaaagcatcgg------------ctggatgaatggtagaaacacctgaccaactaaaaatta |
95 |
Q |
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| T |
34983122 |
aatatccttcttgaagacatatgcgcaccaccaaactaaaaagcatcggaaatgatatcagctggatgaatggtagaaacacctgaccaactaaaaatta |
34983023 |
T |
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| Q |
96 |
ggcgccaagtaccactaaagaattaacaatccatgtagagatgattaattggtttctcttaactgaaactcttaacacatagcgagtcggaaggtattac |
195 |
Q |
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| T |
34983022 |
ggcgccaagtaccattaaagaattaacaatccatgtagaattgattaattggtttctcttgactgaaactcttaacacatagcgagtcagaaggtatcac |
34982923 |
T |
|
| Q |
196 |
tccttgaagaatcaaactatcctttgtagttttccacacgaagagagacaatttaagagacactactttatttcaaattatatgaatgtgcattgacgtg |
295 |
Q |
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| T |
34982922 |
tccttgaagaatcaaactatcctttatagttttccacacgaagagagacaatttaagagacactactttattccaaattatatgaatgtgcattgatgtg |
34982823 |
T |
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| Q |
296 |
aagattatcattaggcatgagaatacgataagcccttttacaaagtatccctcattggggt--tatgttgccagattcatttgtctattctattaacctg |
393 |
Q |
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| T |
34982822 |
aagattatcattaggcatgagaatacgataagcccttttacaaagtatccttcattggggttatatgttgccagattcatttgtctattctattaacctg |
34982723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 492 - 788
Target Start/End: Complemental strand, 34981990 - 34981704
Alignment:
| Q |
492 |
atttcagataacttctgttatcattctagacatatatacaacatatatcacatctcatgatgtctatacatgatccatatcattaaccgattccctaatt |
591 |
Q |
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| T |
34981990 |
atttcagataacttctgttatcattctacacatatatacaacatatatcacatctcatgatgtctatacatgatccatatcattaaccgatcccctaatt |
34981891 |
T |
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| Q |
592 |
tcttcagcatttgaactttcatgtagtttgtaaggttaaatatgtttctagttttataggatatccannnnnnnnattttaatccccgtcactttttgac |
691 |
Q |
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| T |
34981890 |
tcttcagcatttaaactttcttgtagtttgtaa---------tgtttctagttttataggatatccattttttt-attttaatccccgtcactttttgac |
34981801 |
T |
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| Q |
692 |
aaattgtagtctcttttttagagatagtgactaaactactctaaaaatatgaactaaaactgaccacaatttttatagaaaccaaacttgaaagaat |
788 |
Q |
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| T |
34981800 |
aaattgtagtctcttttttagagatagtgactaaactactctaaaaatatgaactaaaactgaccacaatttttatagaaaccaaacttgaaagaat |
34981704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 797 - 987
Target Start/End: Complemental strand, 34981374 - 34981181
Alignment:
| Q |
797 |
ttataggacttaaagcatatttaactcttacgtatatgtt-aacaatcttttcaacccttacgcatatgtttaacaatcttttgacacataatccttcaa |
895 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34981374 |
ttattggacttaaagcatatttaactcttacgtatatgtttaacaatcttttcaacccttacgtatatgtttaacaatcttttgacacataatccttcaa |
34981275 |
T |
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| Q |
896 |
aataatctttttgacacaatatatcatgatatga-tag-tcatccacaaacaatcccacgtttttagtaag-aaaaact-ccacttttctcacaga |
987 |
Q |
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| T |
34981274 |
aataatc-ttttgacacaatatatc-tgatatgattagttcatccacaaacaatcccacgtttttagtaagaaaaaactcccacttttctcacaga |
34981181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 404 - 497
Target Start/End: Complemental strand, 34982624 - 34982531
Alignment:
| Q |
404 |
aagcttaagtgcctcacctgaaagttgaatctagaccgcaaaacaccactatctaaccaagcatcaccccaaaatgatgttgattaaaatttca |
497 |
Q |
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| T |
34982624 |
aagcttaagtgcctcacctgaaaattgaatctagaccgcaaaacaccactatctaaccaaacatcacaccaaaatgatgttgattaaaatttca |
34982531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 35465968 - 35465880
Alignment:
| Q |
58 |
tggatgaatggtagaaacacctgaccaactaaaaattaggcgccaagtaccactaaagaattaacaatccatgtagagatgattaattg |
146 |
Q |
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| T |
35465968 |
tggatgaacggtagaaacacccagccaaccaagaactagccgccaagtaccaccaaagaattcacaatccatgaagagatgattaattg |
35465880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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