View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961R-Insertion-2 (Length: 905)
Name: NF2961R-Insertion-2
Description: NF2961R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961R-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 36056035 - 36056336
Alignment:
| Q |
9 |
taaatcacctgttctgaatgtttgtattgataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056035 |
taaatcacctgttctgaatgtttgtattgataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgat |
36056134 |
T |
|
| Q |
109 |
gggttgttggtggatttgctttgggatgttcatagttggttttttaaacctgtttctgggtttgcagtgtttatgtttaggactaggagtggtttggata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056135 |
gggttgttggtggatttgctttgggatgttcatagttggttttttaaacctgtttctgggtttgcagtgtttatgtttaggactaggagtggtttggata |
36056234 |
T |
|
| Q |
209 |
gtagactatggttagaagataatttagtactgaaagataaagatagggttgaattttctttgttgatctatgcctgtagaactacataatgaaagttcat |
308 |
Q |
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| T |
36056235 |
gtagattgtggttagaggagaatttggtagtgaaagataaagatagggttgaattttctttgttgatctatgcctgtaaaactacataatgaaagttcat |
36056334 |
T |
|
| Q |
309 |
tg |
310 |
Q |
| |
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|| |
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| T |
36056335 |
tg |
36056336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 386 - 633
Target Start/End: Original strand, 36056408 - 36056655
Alignment:
| Q |
386 |
ggaatgattttacttattaactcttttctttgtttaagtgaccgtaattagaatatttgacttcgattagacaccttaaggtatttctcagcttaggtta |
485 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||| |
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| T |
36056408 |
ggaatgattttacttattaactctttcctttgtttaagtgaccgtaattagaatatttgacttcgattagacaccttaaggcatctctaagcttagatta |
36056507 |
T |
|
| Q |
486 |
cttatgtctactctgagtttaatcgttgatttgacaataggacaatcagtgtttttgcacagagttgtgatgcgacgacttcaaaattaaactcttgttt |
585 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36056508 |
cttatgtctactatgaatttaatcgttgatttgacaataggacaatcagtgtttttgcacggagttgtgatgcgacgacttcaaaattaaactcttgttt |
36056607 |
T |
|
| Q |
586 |
tatcaactctcctaacatcatcttactatcaatctaaaaatgcactaa |
633 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
36056608 |
tatcaaaactcctaacatcatcttactaccaatctaaaaatgcactaa |
36056655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 698 - 905
Target Start/End: Original strand, 36056720 - 36056928
Alignment:
| Q |
698 |
cttgtgagaaagttttggattaagacttgaatatgagtaaagatttggtaaaagggaaagagagattgtggttggagtagttgaattgcttttggccttt |
797 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
36056720 |
cttgtgagaaagttttggattaagacgtgaatatgagtgaagatttggtaaaagggaaagaaagattgtggttggagtagttgaattgcttttgaccttt |
36056819 |
T |
|
| Q |
798 |
acagaagaataaagttgagaatctaactaatgagcaaatatcttgaccacattactcttctttgctcttttcaactttgtttgtagctg-tgatgtaaag |
896 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
36056820 |
acagaagaataaagttgagaatctaactaatgagcaaatatcttgaccacattattcttctttgctcttttcaactttgtttgtagctgttaatgtaaag |
36056919 |
T |
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| Q |
897 |
atgctaaaa |
905 |
Q |
| |
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|||||||| |
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| T |
36056920 |
ttgctaaaa |
36056928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 20085528 - 20085273
Alignment:
| Q |
34 |
attgataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggatttgctttggg |
133 |
Q |
| |
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||||||||||||| ||| ||| |||||||||| ||| | ||||||||||| || |||||||| |||||||||||||| || ||||| ||||||||||||| |
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| T |
20085528 |
attgataagaagaatgtgattcgtgtgaagagattgcaatggaattttagagggaatcaaaccatttttgttgatggtttattggttgatttgctttggg |
20085429 |
T |
|
| Q |
134 |
atgttcatagttggttttttaaacct---gtttctgggtttgcagtgtttatgtttaggactaggagtggtttggatagtagactatggttagaagataa |
230 |
Q |
| |
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|||||||| |||||| ||||| ||| | |||||| | ||| || || |||||||| || || |||||||||||||||||| | ||||||||||| || |
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| T |
20085428 |
atgttcatgattggttctttaatcctcaagcttctggttatgctgttttcatgtttagaacaagaagtggtttggatagtagattgtggttagaagagaa |
20085329 |
T |
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| Q |
231 |
tttagtactgaaagataaagatagggttgaattttctttgttgatctatgcctgta |
286 |
Q |
| |
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| |||||||||||| || |||||||| ||||||||||||||||| |||| |
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| T |
20085328 |
gcattctcagaaagataaagacagagttgaattctctttgttgatctatgcatgta |
20085273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 42021508 - 42021707
Alignment:
| Q |
37 |
gataagaagattgtaatttgtgtgaagaggttgaagtggaattttaggggtaatcaaacaatttttgttgatgggttgttggtggatttgctttgggatg |
136 |
Q |
| |
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|||||||||||||| || |||||||| ||||||||||||||| | || ||||||||||||||||| ||||| ||| | |||||| || | |||||| |
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| T |
42021508 |
gataagaagattgtgtttaaggtgaagagattgaagtggaattttcgtggcaatcaaacaatttttgtggatggtttggtagtggatatgatgtgggatt |
42021607 |
T |
|
| Q |
137 |
ttcatagttggttttttaaacc---------tgtttctgggtttgcagtgtttatgtttaggactaggagtggtttggatagtagactatggttagaaga |
227 |
Q |
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| ||| |||| |||| || || || ||||| | ||| || |||||||||||||| |||||||||||| |||||||| ||||||| ||||| |
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| T |
42021608 |
tgcatgattggattttcaatcctagtaatattgattctgtttctgctgtttttatgtttaggacaaggagtggtttgaatagtagattatggttggaaga |
42021707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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