View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961R-Insertion-3 (Length: 900)

Name: NF2961R-Insertion-3
Description: NF2961R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961R-Insertion-3
NF2961R-Insertion-3
[»] chr6 (2 HSPs)
chr6 (249-897)||(32741732-32742385)
chr6 (7-170)||(32741490-32741653)
[»] chr5 (2 HSPs)
chr5 (383-518)||(32122907-32123042)
chr5 (402-435)||(28719711-28719744)
[»] chr1 (1 HSPs)
chr1 (398-456)||(47337023-47337081)


Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 249 - 897
Target Start/End: Original strand, 32741732 - 32742385
Alignment:
Q  249 cgcgccccaactgctacctccggaagcattccctcgggttcccaacacaattcagagtactaacgcggcgtgatttttagacgcgttaaactctaccgcc 348  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  32741732 cgcgccccaactgctacctccggaagcattccctcgggttccaaacacaattcagagtactaacacggcgtgatttttagacgcgttaaactccaccgcc 32741831  T
Q  349 aagacagcacctttatatcttccactaaatccgaccacctaatatccgtattgttaaaaatacgattatttctagctttccaaataacccacaaagttgt 448  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32741832 aagacagcacctttatatcctccactaaatccgaccacctaatatccatattgttaaaaatacgattatttctagctttccaaataacccacaaagttgt 32741931  T
Q  449 atgccaaatgagcctcaacccctctttaaccttcttactagttgccataccatcccaacacgcccaatgagtgtacacattcagaggcataatgaactcc 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32741932 atgccaaatgagcctcaacccctctttaaccttcttactagttgccatatcatcccaacacgcccaatgagtgtacacattcagaggcataatgaactcc 32742031  T
Q  549 ccctccacccaacaaagaagctcaacacaaatcttccataccacttgacagtgc----aaaaaacaaatggctttccgattcccccaccaaatcacaaag 644  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||    
T  32742032 ccctccacccaacaaagaagctcaacacaaatcttccacaccacttgacagtgcaaaaaaaaaaaaaatggctttccgattcccccaccaaatcacaaag 32742131  T
Q  645 aacgcaattcaacgaagcattctccggtaagacgttcctacgggcaagattaattcgggttgggatttggttaaggat-gacctgccaagagaaagctcc 743  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  32742132 gacgcaattcaacgaagcattctccggtaagacgttcctacgggcaagattaattcgggttgggattcggttaaggatggaccttccaagagaaagctcc 32742231  T
Q  744 tactttggatggagccggactcttctaaattttcccgaagaccctcccttcttcctcccccatcacctcgaaatggctctctagcaaaatcaacttattg 843  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32742232 tactttggatggagccggacttttccaaatttgcccgaagaccctcccttcttcctcccccatcacctcgaaatggctctctagcaaaatcaacttattg 32742331  T
Q  844 taagcggatttaaccgtaaaactcccaccatcctccaaacccacttatctaccc 897  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32742332 taagcggatttaaccgtaaaactcccaccatcctccaaacccacttatctaccc 32742385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 7 - 170
Target Start/End: Original strand, 32741490 - 32741653
Alignment:
Q  7 caaaaacgggacacttcccataaactccaaacatggaaaaccaaagctgctgctctaacaacttagcaaagcctgccatactacgagccctaacacagca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32741490 caaaaacgggacacttcccataaactccaaacatggaaaaccaaagctgctgctctaacaacttagcaaagcctggcatactacgagccctaacacagca 32741589  T
Q  107 gcgctatcctacaccaaaaaagagactgcagaagtagttttagcagcaaacagcaccatgatcc 170  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  32741590 gcgctatcctacaccaaaaaagagactacagaagtagttttagcagcaaacagctccatgatcc 32741653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 383 - 518
Target Start/End: Original strand, 32122907 - 32123042
Alignment:
Q  383 ccacctaatatccgtattgttaaaaatacgattatttctagctttccaaataacccacaaagttgtatgccaaatgagcctcaacccctctttaaccttc 482  Q
    |||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| || ||| ||||||||    
T  32122907 ccacctaataaccgtactattaaaaatacaattatttctagctttccaaataacccacaaagttgtatgccaaattaaccgcaaaccttctctaaccttc 32123006  T
Q  483 ttactagttgccataccatcccaacacgcccaatga 518  Q
    ||| |||||| ||  |||  |||||| |||||||||    
T  32123007 ttattagttgtcaagccactccaacatgcccaatga 32123042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 28719711 - 28719744
Alignment:
Q  402 ttaaaaatacgattatttctagctttccaaataa 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  28719711 ttaaaaatacgatcatttctagctttccaaataa 28719744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 47337023 - 47337081
Alignment:
Q  398 attgttaaaaatacgattatttctagctttccaaataacccacaaagttgtatgccaaa 456  Q
    ||||||||||||||| ||||| |||||  |||||||||||||||| || ||||||||||    
T  47337023 attgttaaaaatacggttattcctagccctccaaataacccacaaggtggtatgccaaa 47337081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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