View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961R-Insertion-4 (Length: 817)
Name: NF2961R-Insertion-4
Description: NF2961R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961R-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 661; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 7 - 752
Target Start/End: Original strand, 40846529 - 40847271
Alignment:
| Q |
7 |
cactgtcttcacattgaactgtatgatggtcttagagctactttgcacatcttgtgctagtttagtctctttcaataaaaattatgcttataaaaataaa |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846529 |
cactgtcttcacattgaactgtgtgatggtcttagagctactttgcacatcttgtgctagtttagtctctttcaataaaaattatgcttataaaaataaa |
40846628 |
T |
|
| Q |
107 |
gtcaatggtttgaagaagttgtaatctagactgtgtaataattatatccaacagcttnnnnnnnncaacgcaactttataatcttgtcagctgattcgtt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40846629 |
gtcaatggtttgaagaagttgtaatctagactgt--aataattat--ccaacagcttaaaaaaaacaacgcaactttataatcttgtcagctgattcgtt |
40846724 |
T |
|
| Q |
207 |
ttacctgcattgttaggtttgcactttgcagcagtaagttacaatccaatattggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaa |
306 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846725 |
ttacctgcattgttaggtttgcactttgcagtagtaagttacaagccaatattggttgctcagttctaaggtactatcgaaggaaaaggacttcaagaaa |
40846824 |
T |
|
| Q |
307 |
ctatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatat |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40846825 |
ctatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatggtatggagtatat |
40846924 |
T |
|
| Q |
407 |
gcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctat-aaagtttctcaaacatgagacaattac |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40846925 |
gcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaaagtttctcaaacatgagacaattac |
40847024 |
T |
|
| Q |
506 |
ttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagtt |
605 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40847025 |
ttgataaaacgatggaaatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaacactcatctatttggtagtt |
40847124 |
T |
|
| Q |
606 |
cttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattat |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40847125 |
cttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtatttctccgattggaagaagactttcattat |
40847224 |
T |
|
| Q |
706 |
aaataaccatttgacaacattcatgccttcctttaacaccaaccttt |
752 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
40847225 |
aaataaccatttgacaacattcatgtctttctttaacaccaaccttt |
40847271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 387 - 795
Target Start/End: Original strand, 40842733 - 40843132
Alignment:
| Q |
387 |
aaacatggtatggagtatatgcttcattttcaaaaataaaatatacttcaattaagttcaagcagtgatttttcacttttaaaatcatctataaagtttc |
486 |
Q |
| |
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|||||||||| | |||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
40842733 |
aaacatggtacgaagtatatgcttcgttttcaagaataaaatatatat-aattaagttcaagcagtgatttttcacttttataatcatcta--aagtttc |
40842829 |
T |
|
| Q |
487 |
tcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtttacaatccatttattataaaaataaataaatcaaaac |
586 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40842830 |
tcaaacatgagacaattacttgataaa-cgatggacatttaacaaaatataacatgggaagtttacaatccatttattacaaaaataaataaatcataac |
40842928 |
T |
|
| Q |
587 |
actcatctat---gtggtagttcttaataaccataatcttcaacctcttagataaagctttacgcatagaaaaacaattaactatatatgtattcctccg |
683 |
Q |
| |
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| T |
40842929 |
actcatctatttagtactagttcctaataaccataatcttcaacctcttggataaagctttaggcataggaaaacaattaac----catgcattcctcc- |
40843023 |
T |
|
| Q |
684 |
attggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaacaccaaccttttcaatcatatcggtactcaaattaaaccttt |
783 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||| |
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| T |
40843024 |
---ggaagaaggctctcattatagataaccatttgacaacattcatgtcttcctttaacaccaaccttctcaatcatgtcggtattcaaattaaaccttt |
40843120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
304 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
378 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 777 - 817
Target Start/End: Original strand, 40847265 - 40847305
Alignment:
| Q |
777 |
aacctttccacttcttcgtctatatttaaataaaatatatc |
817 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40847265 |
aacctttccacttcttcgtctatatttaaataaaatatatc |
40847305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 450 - 742
Target Start/End: Original strand, 4040870 - 4041145
Alignment:
| Q |
450 |
agtgatttttcacttttaaaatcatctataaagtttctcaaacatgagacaattacttgataaaacgatggacatttaacaaaatatgtcttgggaagtt |
549 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| ||||||| | | ||| || || ||||||| ||||||||||||||||| | |||| |||| |
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| T |
4040870 |
agtgatttttcactcttaaaattatc--taaagtttctgaaacatgggctatttatttaat-aaacgatacacatttaacaaaatatgacatgggtagtt |
4040966 |
T |
|
| Q |
550 |
tacaatccatttattataaaaataaataaatcaaaacactcatctatgtggtagttcttaataaccataatcttcaacctcttagataaagctttacgca |
649 |
Q |
| |
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||||||||||||||||| | ||||| |||||| |||||||||||| ||| ||||| ||||| ||||||||||||||| ||||||| || || |
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|
| T |
4040967 |
tacaatccatttattat--atataaagaaatcataacactcatcta--------ttcctaatatccatactcttcaacctcttaggtaaagctatatgct |
4041056 |
T |
|
| Q |
650 |
tagaaaaacaattaactatatatgtattcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
742 |
Q |
| |
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| |||| ||| ||| ||| |||||| | ||||||||||| |||||||||||||||||| | |||||||||| || |||||||||||| |
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| T |
4041057 |
aatgaaaataatcaac----catgcattccttcaattggaagaaggctttcattataaataaccgtctgacaacatttataccttcctttaac |
4041145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 675 - 742
Target Start/End: Complemental strand, 46503118 - 46503051
Alignment:
| Q |
675 |
attcctccgattggaagaagactttcattataaataaccatttgacaacattcatgccttcctttaac |
742 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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|
| T |
46503118 |
attcctccaattggaagaagactttcattataaataaccatttgactacatctatgccttccattaac |
46503051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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