View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961R-Insertion-8 (Length: 105)

Name: NF2961R-Insertion-8
Description: NF2961R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961R-Insertion-8
NF2961R-Insertion-8
[»] chr7 (5 HSPs)
chr7 (9-101)||(46629267-46629359)
chr7 (13-86)||(46177017-46177090)
chr7 (9-86)||(46643667-46643744)
chr7 (13-73)||(46617899-46617959)
chr7 (13-73)||(46636597-46636657)
[»] chr1 (1 HSPs)
chr1 (13-75)||(15770075-15770137)
[»] chr3 (1 HSPs)
chr3 (11-44)||(18376224-18376257)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 46629267 - 46629359
Alignment:
Q  9 attatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatcctctctcttgttaat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46629267 attatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatcctctctgttgttaat 46629359  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 46177090 - 46177017
Alignment:
Q  13 tctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatc 86  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  46177090 tctcgcttgattactcatgtctctgaagaatcgcaagatactttgttacaggtattcaactgtgccatctcatc 46177017  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 46643744 - 46643667
Alignment:
Q  9 attatctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgtgccatcccatc 86  Q
    |||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||||||||||| |||| ||||    
T  46643744 attatctcgcttgattcctcatgtctctgacgaatctcaagatacatttttacaggtattcaactgtgacatctcatc 46643667  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 46617899 - 46617959
Alignment:
Q  13 tctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaact 73  Q
    |||||||||||||||||||| ||||||||||||||| || || ||| ||||||||||||||    
T  46617899 tctcgcttgattcctcatgtctctgaagaatctcaaaatgctctgtcacaggtattcaact 46617959  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 46636597 - 46636657
Alignment:
Q  13 tctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaact 73  Q
    |||||||||||||||||||| |||||||||||||||||  || ||| ||||||||||||||    
T  46636597 tctcgcttgattcctcatgtctctgaagaatctcaagaggctctgtcacaggtattcaact 46636657  T

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Target: chr1 (Bit Score: 43; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 15770137 - 15770075
Alignment:
Q  13 tctcgcttgattcctcatgtatctgaagaatctcaagattctttgttacaggtattcaactgt 75  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||| ||||||||||||||||    
T  15770137 tctcgcttgattactcatgtatctgaagaatcgcaagatactctgtcacaggtattcaactgt 15770075  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 18376257 - 18376224
Alignment:
Q  11 tatctcgcttgattcctcatgtatctgaagaatc 44  Q
    ||||||||||||||||||||||||| ||||||||    
T  18376257 tatctcgcttgattcctcatgtatccgaagaatc 18376224  T

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