View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961_high_1 (Length: 611)

Name: NF2961_high_1
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961_high_1
NF2961_high_1
[»] chr1 (8 HSPs)
chr1 (135-596)||(13153453-13153917)
chr1 (373-465)||(15415872-15415964)
chr1 (485-568)||(13806779-13806862)
chr1 (456-534)||(31318514-31318593)
chr1 (482-571)||(14932339-14932428)
chr1 (372-465)||(23420476-23420569)
chr1 (390-464)||(33175502-33175577)
chr1 (393-465)||(31318422-31318494)
[»] scaffold0999 (1 HSPs)
scaffold0999 (135-596)||(2718-3180)
[»] chr8 (5 HSPs)
chr8 (460-572)||(13529062-13529174)
chr8 (460-572)||(13618601-13618713)
chr8 (372-465)||(13528944-13529037)
chr8 (372-465)||(13618483-13618576)
chr8 (516-571)||(26883323-26883378)
[»] chr5 (3 HSPs)
chr5 (20-83)||(3762163-3762228)
chr5 (456-569)||(24847235-24847349)
chr5 (373-465)||(24847370-24847462)
[»] chr2 (2 HSPs)
chr2 (390-454)||(23854063-23854127)
chr2 (528-596)||(16857618-16857687)
[»] chr7 (5 HSPs)
chr7 (372-465)||(19138776-19138869)
chr7 (372-465)||(20738175-20738268)
chr7 (489-568)||(19138917-19138996)
chr7 (489-568)||(20738316-20738395)
chr7 (371-454)||(2352133-2352216)
[»] chr6 (1 HSPs)
chr6 (485-570)||(20975145-20975230)
[»] chr4 (1 HSPs)
chr4 (372-454)||(25367707-25367789)
[»] chr3 (4 HSPs)
chr3 (121-208)||(11474405-11474492)
chr3 (206-281)||(11474531-11474606)
chr3 (485-567)||(31476642-31476724)
chr3 (528-596)||(33578805-33578873)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 135 - 596
Target Start/End: Complemental strand, 13153917 - 13153453
Alignment:
Q  135 aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 234  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13153917 aagaatcaaaattacatctatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 13153818  T
Q  235 ggacatgacaagaaa--gtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnnnn-ggataagtcttggtaaactgacctatgagg 331  Q
    ||||||| |||||||  ||||||||||||||||||||| |||||||||| |||||||             ||||||||||||| ||||||||||||||||    
T  13153817 ggacatgtcaagaaattgtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgagg 13153718  T
Q  332 acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13153717 acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt 13153618  T
Q  432 ctccacagggattgccgttcaacgaagcaattaaagagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttg 531  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  13153617 ctccacagggattgtcgttcaacgaagcaattaaagagaaatagggttctagtttgcaagttttgaaatgtcttgcacaatgcgagattaaatttgtttg 13153518  T
Q  532 attcagaatattaacgacgattaaggtttccttgaatcccttatactttttagttggaattaact 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13153517 attcagaatattaacgacgattaaggtttccttgaatcccttataccttttagttggaattaact 13153453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 465
Target Start/End: Original strand, 15415872 - 15415964
Alignment:
Q  373 gatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    |||||||||||||| | ||| | ||| ||  |||||||||||||||||||  |||||||||||| || ||||| ||||||||  |||||||||    
T  15415872 gatggacgaattgacaagtgtatcaagtcgtaacaagtaataaaacagtaagttatcgtctccatagagattgtcgttcaacttagcaattaa 15415964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 568
Target Start/End: Original strand, 13806779 - 13806862
Alignment:
Q  485 ttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaat 568  Q
    ||||||||| |||| |||||| ||||||  || |||| |||||||||||| | |  ||||||| ||||||||||||||||||||    
T  13806779 ttgcaagttctgaattgtcttgcacaatgtgaaattaggtttgtttgattaatatgattaacggcgattaaggtttccttgaat 13806862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 534
Target Start/End: Original strand, 31318514 - 31318593
Alignment:
Q  456 aagcaattaaa-gagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgatt 534  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||| |||||| || ||| ||||||||  |||||||||||    
T  31318514 aagcaattaaaagagaaatagggttttgtgttgcaagttttgaattgtctttcaaaatgcgagattatttttgtttgatt 31318593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 571
Target Start/End: Original strand, 14932339 - 14932428
Alignment:
Q  482 ggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaatccc 571  Q
    |||||||||||||| || |||||| |||||| |||||||| ||||| ||||||||||  | || ||  ||||| ||||| ||||||||||    
T  14932339 ggtttgcaagtttttaattgtcttgcacaatgcgagattaggtttggttgattcagataagtagcggagattagggttttcttgaatccc 14932428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 23420476 - 23420569
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    |||| |||||||||  | ||| ||||||||  |||||||||||||  ||||  |||||||||||||| |||||| ||||||||  |||||||||    
T  23420476 tgatagacgaattggcaagtgtaccaaatcgtaacaagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaa 23420569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 464
Target Start/End: Original strand, 33175502 - 33175577
Alignment:
Q  390 gtgcaccaaatca-aaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaatta 464  Q
    ||||||||||||| ||||||||||||||| ||||  ||||| ||||||||  ||||| ||||||||  ||||||||    
T  33175502 gtgcaccaaatcataaacaagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaatta 33175577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 465
Target Start/End: Original strand, 31318422 - 31318494
Alignment:
Q  393 caccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    |||||||| | || ||||||||||  ||||  |||||||||||||| || ||| ||||||||| |||||||||    
T  31318422 caccaaattataataagtaataaagtagtaagttatcgtctccacatggtttgtcgttcaacggagcaattaa 31318494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 135 - 596
Target Start/End: Complemental strand, 3180 - 2718
Alignment:
Q  135 aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 234  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3180 aagaatcaaaattacatctatgatttatggtgtaagaaagaagatactaaaagttattgaatatatagaagatgtagtttgatcttactgcatgaagaga 3081  T
Q  235 ggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnnnn-ggataagtcttggtaaactgacctatgaggac 333  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||             ||||||||||||| ||||||||||||||||||    
T  3080 ggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgaggac 2981  T
Q  334 ccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct 433  Q
    |||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2980 ccatgaaaacatggttatccaagaactaaattgtctattgatggatgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct 2881  T
Q  434 ccacagggattgccgttcaacgaagcaattaaagagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgat 533  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  2880 ccacagagattgtcgttcaacgaagcaattaaagagaaatagggttctggtttgcaatttttgaaatgtcttccacaatgcgagattaagtttgtttgat 2781  T
Q  534 tcagaatattaacgacgattaaggtttccttgaatcccttatactttttagttggaattaact 596  Q
    ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  2780 tcaaaatattaacgacgattaagatttccttgaatcccttataccttttagttggaattaact 2718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 13529062 - 13529174
Alignment:
Q  460 aattaaagagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtt 559  Q
    ||||||||||||||| |||| |||||||||||||||||  | |||| |||||| | |||||| ||||||||| ||||||| |||||||| |||||  |||    
T  13529062 aattaaagagaaataaggttttggtttgcaagttttgatttatcttgcacaatgcaagattaggtttgtttggttcagaagattaacgatgattagagtt 13529161  T
Q  560 tccttgaatccct 572  Q
    |||||||||||||    
T  13529162 tccttgaatccct 13529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 13618601 - 13618713
Alignment:
Q  460 aattaaagagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtt 559  Q
    ||||||||||||||| |||| |||||||||||||||||  | |||| |||||| | |||||| ||||||||| ||||||| |||||||| |||||  |||    
T  13618601 aattaaagagaaataaggttttggtttgcaagttttgatttatcttgcacaatgcaagattaggtttgtttggttcagaagattaacgatgattagagtt 13618700  T
Q  560 tccttgaatccct 572  Q
    |||||||||||||    
T  13618701 tccttgaatccct 13618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 13528944 - 13529037
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    |||||| |||||||||| ||||||||||||| || ||||||||||  ||||  |||||||||||| | |||||| | |||||||||||| ||||    
T  13528944 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctccatatggattgtcattcaacgaagcagttaa 13529037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 13618483 - 13618576
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    |||||| |||||||||| ||||||||||||| || ||||||||||  ||||  |||||||||||| | |||||| | |||||||||||| ||||    
T  13618483 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctccatatggattgtcattcaacgaagcagttaa 13618576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 26883378 - 26883323
Alignment:
Q  516 agattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaatccc 571  Q
    ||||||||||| | |||||||||  ||||| ||| |||||||||||||||||||||    
T  26883378 agattaagtttttgtgattcagatgattaatgacaattaaggtttccttgaatccc 26883323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 3762163 - 3762228
Alignment:
Q  20 gatcgaagtaggcataccgtcaaccactttacccaacaaaccttctta--ccccatcacacctccc 83  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  3762163 gatcgaggtaggcataccgtcgaccactttacccaacaaaccttcttaccccccatcacacctccc 3762228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 456 - 569
Target Start/End: Complemental strand, 24847349 - 24847235
Alignment:
Q  456 aagcaattaaa-gagaaatagggttctggtttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgatta 554  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| | |||| |||||||| |||| ||||||||| |  ||||| |  |||||    
T  24847349 aagcaattaaaagagaattagggttttggtttgcaagttttgatatgtcttgctcaatgcgagattatgtttatttgattcaaataattaatgttgatta 24847250  T
Q  555 aggtttccttgaatc 569  Q
     |||||| |||||||    
T  24847249 gggtttctttgaatc 24847235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 465
Target Start/End: Complemental strand, 24847462 - 24847370
Alignment:
Q  373 gatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    ||||||| |||||  | |||||| ||||| ||||||||||||||  ||||  |||||||||  ||| | |||  |||||||||||||||||||    
T  24847462 gatggacaaattggcaagtgcacaaaatcgaaacaagtaataaattagtaagttatcgtctttacaagaattctcgttcaacgaagcaattaa 24847370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 23854063 - 23854127
Alignment:
Q  390 gtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaac 454  Q
    ||||||||||||| |||||||||||||  |||| ||||| |||||||||||||||| ||||||||    
T  23854063 gtgcaccaaatcataacaagtaataaagtagtaaattattgtctccacagggattgtcgttcaac 23854127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 16857687 - 16857618
Alignment:
Q  528 tttgattcagaatattaacgacgattaaggtttccttgaatcccttatacttt-ttagttggaattaact 596  Q
    |||||||||||  ||||||| |||||| | |||||||||||||||| |||||| || |||||||||||||    
T  16857687 tttgattcagataattaacggcgattatgatttccttgaatcccttctactttctttgttggaattaact 16857618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 19138776 - 19138869
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    ||||||||||||||| |  |||||| |||  ||||||||||||||  |||| ||||| ||||||||| ||||||  |||||| |||||||||||    
T  19138776 tgatggacgaattgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccacatggattgttgttcaatgaagcaattaa 19138869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 465
Target Start/End: Original strand, 20738175 - 20738268
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaacgaagcaattaa 465  Q
    ||||||||||||||| |  |||||| |||  ||||||||||||||  |||| ||||| ||||||||| ||||||  |||||| |||||||||||    
T  20738175 tgatggacgaattgacaaatgcacctaattgaaacaagtaataaagtagtaaattattgtctccacatggattgttgttcaatgaagcaattaa 20738268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 19138917 - 19138996
Alignment:
Q  489 aagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaat 568  Q
    |||||||||| ||||||  ||||| ||| |||| ||||||||||||||||  |||| |||||||||  ||||||||||||    
T  19138917 aagttttgaattgtcttgtacaatgcgaaattatgtttgtttgattcagatgattatcgacgattagagtttccttgaat 19138996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 568
Target Start/End: Original strand, 20738316 - 20738395
Alignment:
Q  489 aagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaat 568  Q
    |||||||||| ||||||  ||||| ||| |||| ||||||||||||||||  |||| |||||||||  ||||||||||||    
T  20738316 aagttttgaattgtcttgtacaatgcgaaattatgtttgtttgattcagatgattatcgacgattagagtttccttgaat 20738395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 2352133 - 2352216
Alignment:
Q  371 ttgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaac 454  Q
    ||||| |||||||||| | ||||| ||||||  |||||||||||||  ||||  ||||| |||||||| |||||| ||||||||    
T  2352133 ttgattgacgaattgacaagtgcatcaaatcgtaacaagtaataaagtagtaagttatcatctccacatggattgtcgttcaac 2352216  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 20975145 - 20975230
Alignment:
Q  485 ttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaatcc 570  Q
    |||||||||||||| |||| | |||||| | |||||| ||||||||||||||||| ||||| | ||||||  ||||| ||||||||    
T  20975145 ttgcaagttttgaattgtccttcacaatgcaagattaggtttgtttgattcagaagattaatggcgattagagtttcattgaatcc 20975230  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 454
Target Start/End: Complemental strand, 25367789 - 25367707
Alignment:
Q  372 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagggattgccgttcaac 454  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||  ||||  |||  ||||||||| | |||| ||||||||    
T  25367789 tgatggacgaattgacaagtgcaccaaatcgaaacaagtaataaagtagtaagttacagtctccacatgaattgtcgttcaac 25367707  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 11474405 - 11474492
Alignment:
Q  121 tctaatggtatagaaagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatg 208  Q
    ||||||| |||||||| |   ||||| |||| |||||||||||||||||| | ||  ||||||||||||||||  |||| ||||||||    
T  11474405 tctaatgatatagaaaaatgaaaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatg 11474492  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 11474531 - 11474606
Alignment:
Q  206 atgtagtttgatcttactgcatgaagagaggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaa 281  Q
    |||||||||  ||||| |||||||| | |||||| || |||||||  |||||||||||||||| ||||| ||||||    
T  11474531 atgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaa 11474606  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 567
Target Start/End: Original strand, 31476642 - 31476724
Alignment:
Q  485 ttgcaagttttgaaatgtcttacacaatacgagattaagtttgtttgattcagaatattaacgacgattaaggtttccttgaa 567  Q
    |||||||||||||| |||||| ||||||  ||||||| || || || |||||||  | || |||||||||| |||||||||||    
T  31476642 ttgcaagttttgaattgtcttccacaatgagagattaggtatggtttattcagataagtagcgacgattaaagtttccttgaa 31476724  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 33578873 - 33578805
Alignment:
Q  528 tttgattcagaatattaacgacgattaaggtttccttgaatcccttatactttttagttggaattaact 596  Q
    |||||||||||   ||||||| ||||| ||| |||||||||||  | |||||||| |||||||||||||    
T  33578873 tttgattcagatacttaacgatgattatggtatccttgaatcctctttacttttttgttggaattaact 33578805  T

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