View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_high_11 (Length: 280)
Name: NF2961_high_11
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 3685326 - 3685571
Alignment:
| Q |
18 |
agtttcaagagcttaatgctttatttctaacaacaagattaggttgtagcgtcgtcatggagttcgactaccgcactgtgatagatctgttatatttctt |
117 |
Q |
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| T |
3685326 |
agtttcaagagcttaatgctttatttctagcaacaagattaggttgtagcgtcgtcatggagtttgactaccgcactgtgatggatctgttatatttctt |
3685425 |
T |
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| Q |
118 |
gttaacattaatgattatatggttgatgaggttcaggttgaaatcatcctatatcacggagtttgacaccatgtggttatcctttttggtaaatatcatt |
217 |
Q |
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| T |
3685426 |
gttgacattaatgattatatggttgatgaggttcaggttgaaatcatcctatatcaaggagtttgacaccatgtggttatcctttttggtaaataccatt |
3685525 |
T |
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| Q |
218 |
acatattctcttagctttatagtttcatattaatgtttttcatatt |
263 |
Q |
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| T |
3685526 |
acatattctcttagtgttatagtttcatattaatgtttttcatatt |
3685571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 3677460 - 3677582
Alignment:
| Q |
91 |
cactgtgatagatctgttatatttcttgttaacattaatgattatatggttgatgaggttcaggttgaaatcatcctatatcacggagtttgacaccatg |
190 |
Q |
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| T |
3677460 |
cactgtgttggatctgatatatctcttgtcaacattactggttatttggttgataagatttaagctgaagtcatcttatatgaaggagtttgataacatg |
3677559 |
T |
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| Q |
191 |
tggttatcctttttggtaaatat |
213 |
Q |
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| T |
3677560 |
tggttatcctttttggtaaatat |
3677582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 3661939 - 3662031
Alignment:
| Q |
121 |
aacattaatgattatatggttgatgaggttcaggttgaaatcatcctatatcacggagtttgacaccatgtggttatcctttttggtaaatat |
213 |
Q |
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| T |
3661939 |
aacattactggttatttggatgataagattcaagctgaaatcatcctatatcaaggagtttgacaacatgtggttatcattgttggtaaatat |
3662031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 3668029 - 3668117
Alignment:
| Q |
121 |
aacattaatgattatatggttgatgaggttcaggttgaaatcatcctatatcacggagtttgacaccatgtggttatcctttttggtaa |
209 |
Q |
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| T |
3668029 |
aacattattggttatttggttgattagattcaggctgaagtcttcctatatcaaggagtttgacaacatgaggttatcttttttggtaa |
3668117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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