View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_high_16 (Length: 244)
Name: NF2961_high_16
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38260985 - 38260748
Alignment:
| Q |
1 |
ttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactg |
100 |
Q |
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| T |
38260985 |
ttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccc-aacatcagcaactg |
38260887 |
T |
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| Q |
101 |
aaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcat |
200 |
Q |
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| T |
38260886 |
aaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcat |
38260787 |
T |
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| Q |
201 |
catcatgttgttgttcttgttgttattgatgattatgtc |
239 |
Q |
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| T |
38260786 |
catcatgttgttattcttgttgttattgatgatgatgtc |
38260748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 38244683 - 38244467
Alignment:
| Q |
3 |
gtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacatccccaacatcagcaactgaa |
102 |
Q |
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| T |
38244683 |
gtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaacaaat |
38244584 |
T |
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| Q |
103 |
atattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaagcagcaacataagtattcattgtcatca |
202 |
Q |
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| T |
38244583 |
aaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtag---tagaagtattcattttcatca |
38244487 |
T |
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| Q |
203 |
tcatgttgttgttcttgttg |
222 |
Q |
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| T |
38244486 |
tcttgttgttgttgttgttg |
38244467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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