View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_high_2 (Length: 548)
Name: NF2961_high_2
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Complemental strand, 3899780 - 3899262
Alignment:
| Q |
12 |
atgaacgagaaacacggaccaatccacaaatgcccatctttagtgatacagaccacaccctgctcaataacacaaagaaccaaaatctcttgattaaatc |
111 |
Q |
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| T |
3899780 |
atgaacgagaaacacggaccaatccacaaatgcccatctttagtgatacagaccacaccctgctcaataacacaaagaaccaaattctcttgattaaatc |
3899681 |
T |
|
| Q |
112 |
atggccctatgtgacaatcagacaaacgatatgtgattcatgtaggatatgtcataaccgcgtagccattttgaacctagaatcaattaaacataaccta |
211 |
Q |
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| T |
3899680 |
atggccctatgtgacaatcagacaaacgatatgtgattcatgtaggatatgtcataaccgcgtagccattttgaacctagaatcaattaaacataaccta |
3899581 |
T |
|
| Q |
212 |
aatgccaggtgaaaggtatatttttcattcggttaaacctataaactctcctaaaaccctcaccggcttatgcgttggaatcaggtacaccgctcatttt |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
3899580 |
aatgtcaggtgaaaggtatatttttcattcggttaaacctataaactctcctaaaaccctcaccggcttaagcgttggaatcaggtacaccactcatttt |
3899481 |
T |
|
| Q |
312 |
gctgatcaacatcgatcctccatcgtgttagagcaattttaaattgtcgtcttcaagtccactctaaattattagtgccgtttgtggaaattatttattg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3899480 |
gctgatcaacatcgatcctccatcgtgttagagcaattttaaattgttgtcttcaagtccactctaaattattagtgctgtttgtggaaattatttattg |
3899381 |
T |
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| Q |
412 |
attctcatatcttttcaacatttttcgatggttggaagaggaagaaaaaccactgcaacccccacnnnnnnnnnnnnttgatgatagcttttcatttaac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3899380 |
attctcatatcttttcaacatttttcgatggttggaagagaaagaaaaaccactgcaacccccaccacacacacacattgatgatagcttttcatttaac |
3899281 |
T |
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| Q |
512 |
taaaaattatctccaaact |
530 |
Q |
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||||||||||||||||||| |
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| T |
3899280 |
taaaaattatctccaaact |
3899262 |
T |
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