View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_high_7 (Length: 351)
Name: NF2961_high_7
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 34594164 - 34594486
Alignment:
| Q |
18 |
caatgttcaggtaaaccccattttcatcgcaaacttgacacaaaacttcactaaagaaaaatgaatctttcnnnnnnnnnttgatcataccaaggaagat |
117 |
Q |
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| T |
34594164 |
caatgttcaggtaaaccccattttcatcgcaaacttgacacaaaacttcactaaagaaaaatgaatctttcaaaaaaa--ttgatcataccaaggaagat |
34594261 |
T |
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| Q |
118 |
tctgatgcagtctttggcctcaactccagcatctacaaaacgcaatgaaaa-tatcgtataaatcacagcaaaatgacgaaacaaattcnnnnnnnnntg |
216 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
34594262 |
tctgatgcagtctttggcttcaaccccagcatctacaaaacgcaatgaaaaatatcgtataaatcacagcaaaatgacgaaacaaattcaacaaaaaatg |
34594361 |
T |
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| Q |
217 |
agtaaaaatataaagaaaactcgcctatgccggaaaatccaacacggcgtttcttcttggtttcatcgttgggatctgatttcaaagcgtgcttctgctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594362 |
agtaaaaatataaagaaaactcgcctatgccggaaaatccaacacggcgtttcttcttggtttcatcgttgggatctgatttcaaagcgtgcttctgctt |
34594461 |
T |
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| Q |
317 |
ctgacccatttctttcggttctgtg |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
34594462 |
ctgacccatttctttcggttctgtg |
34594486 |
T |
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