View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_low_11 (Length: 345)
Name: NF2961_low_11
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 35620431 - 35620151
Alignment:
| Q |
1 |
acgcttcgtgtggacttgcacgtgtcgcatgacctttaattgcggagatgtttgtacggtactgttcataattcataggacatcgagccaaacacaaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35620431 |
acgcttcgtgtggacttgcacgtgtcgcatgacctttaattgcggagatgtttgtacggtactgttcataattcatagtacatcgagccaaacacaaccc |
35620332 |
T |
|
| Q |
101 |
atgctccattttagtcctcatatagccacggaaattgctggagaattactcaagtggagccttcggctttcgattgagagagtagccatcggatcccatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| |
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| T |
35620331 |
atgctccattttagtcctcatatagccacggaaattggtggagaattactcaagtggagccttcgggtttcgattgagagagtagctatcagaacccatt |
35620232 |
T |
|
| Q |
201 |
tgtgtaacattgtgtcgagactgtcacatgacattgtgaaagagaaagaaaagttaacaacaaaatcacgtgtcatattat |
281 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35620231 |
tgtgtaacattgtgtcgagactgtcacatgacattataaaagagaaagaaaagttaacaacaaaatcacgtgtcatattat |
35620151 |
T |
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