View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961_low_13 (Length: 317)

Name: NF2961_low_13
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961_low_13
NF2961_low_13
[»] chr8 (13 HSPs)
chr8 (26-136)||(34789742-34789852)
chr8 (1-86)||(5973037-5973122)
chr8 (26-94)||(5942780-5942848)
chr8 (26-85)||(7944453-7944512)
chr8 (30-85)||(30674334-30674389)
chr8 (30-85)||(15078875-15078930)
chr8 (27-94)||(34048630-34048697)
chr8 (272-307)||(34789572-34789607)
chr8 (26-72)||(34812701-34812747)
chr8 (30-85)||(15167344-15167399)
chr8 (38-85)||(38843426-38843473)
chr8 (26-68)||(8103027-8103069)
chr8 (30-82)||(38009085-38009137)
[»] chr4 (8 HSPs)
chr4 (26-77)||(5893130-5893181)
chr4 (30-85)||(39329322-39329377)
chr4 (30-85)||(52468407-52468462)
chr4 (31-89)||(24614077-24614135)
chr4 (26-85)||(11906832-11906891)
chr4 (30-85)||(36118389-36118444)
chr4 (30-97)||(39655171-39655238)
chr4 (33-81)||(27112154-27112202)
[»] chr7 (7 HSPs)
chr7 (31-96)||(26917650-26917715)
chr7 (26-85)||(23020415-23020473)
chr7 (30-85)||(23859190-23859245)
chr7 (1-85)||(23744884-23744968)
chr7 (26-85)||(38971365-38971424)
chr7 (30-96)||(2611180-2611246)
chr7 (33-82)||(12419428-12419477)
[»] chr2 (15 HSPs)
chr2 (29-89)||(12694794-12694854)
chr2 (26-85)||(21665632-21665691)
chr2 (26-72)||(44914848-44914894)
chr2 (1-94)||(16097095-16097188)
chr2 (30-89)||(10252532-10252591)
chr2 (1-71)||(13800489-13800559)
chr2 (33-85)||(12133967-12134019)
chr2 (30-82)||(37182760-37182812)
chr2 (30-94)||(38400914-38400978)
chr2 (26-82)||(42029261-42029317)
chr2 (30-85)||(11952520-11952575)
chr2 (1-96)||(24035465-24035560)
chr2 (30-96)||(11912676-11912742)
chr2 (26-63)||(28425660-28425697)
chr2 (27-63)||(37622308-37622344)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-69)||(206436-206479)
[»] chr1 (4 HSPs)
chr1 (26-85)||(45758620-45758679)
chr1 (26-63)||(43235720-43235757)
chr1 (26-85)||(5533436-5533495)
chr1 (29-85)||(6221803-6221859)
[»] scaffold0022 (2 HSPs)
scaffold0022 (26-82)||(40201-40257)
scaffold0022 (26-82)||(138261-138317)
[»] chr5 (11 HSPs)
chr5 (29-85)||(35080700-35080756)
chr5 (26-85)||(2530826-2530885)
chr5 (1-85)||(34425991-34426075)
chr5 (33-68)||(2412204-2412239)
chr5 (1-96)||(10407549-10407644)
chr5 (30-85)||(40794254-40794309)
chr5 (30-96)||(11242236-11242302)
chr5 (27-85)||(27530608-27530666)
chr5 (26-70)||(10543785-10543829)
chr5 (30-82)||(26718880-26718932)
chr5 (30-82)||(26988624-26988676)
[»] scaffold1320 (1 HSPs)
scaffold1320 (30-85)||(1471-1526)
[»] scaffold0097 (1 HSPs)
scaffold0097 (30-85)||(39045-39100)
[»] chr3 (1 HSPs)
chr3 (26-65)||(32319108-32319147)
[»] scaffold0902 (1 HSPs)
scaffold0902 (1-72)||(4407-4478)
[»] chr6 (3 HSPs)
chr6 (30-96)||(20611908-20611974)
chr6 (29-63)||(21183650-21183684)
chr6 (33-81)||(2477520-2477568)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 34789852 - 34789742
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccctaatggttgatattataggggttgctcttc 125  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  34789852 tacatttttattttattacggaccttttttcacttatagagccgagcttccagattcttaaaaatgaccctaatggttgatattataggcgttgctcttc 34789753  T
Q  126 cgcaagcttag 136  Q
    |||||||||||    
T  34789752 cgcaagcttag 34789742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5973122 - 5973037
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaa 86  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||| ||| ||| || ||||||    
T  5973122 tagaacattgttcttttaaaacgaatacatttttattttattacagacctcttttcatttacagagccaagcctccggaatcgtaa 5973037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 5942780 - 5942848
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgacc 94  Q
    ||||||||||||||||||| | ||||||||||||||||||  ||||||||| |||||||| ||| ||||    
T  5942780 tacatttttattttattacggtcctcttttcacttacagaatcgagcttccggattcgtaggaacgacc 5942848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 7944512 - 7944453
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| |||||||||||| |||||||  ||||||||| ||||||||    
T  7944512 tacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgta 7944453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 30674389 - 30674334
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||   ||||||||||||||||||||||||| ||||||||||||    
T  30674389 tttttattttattacgagcctcttttcacttacagagccgagcctccagattcgta 30674334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 15078875 - 15078930
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| ||| |||||||||||||||||| |||| | ||||||||||    
T  15078875 tttttattttattacggacttcttttcacttacagagcagagccttcagattcgta 15078930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 34048697 - 34048630
Alignment:
Q  27 acatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgacc 94  Q
    |||||||||||||||||| |  || ||||||||||||||||||||| |||| ||||||| ||| ||||    
T  34048697 acatttttattttattacgggtctattttcacttacagagccgagcctccaaattcgtaggaacgacc 34048630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 34789607 - 34789572
Alignment:
Q  272 aacatgattcataaataaaatatcttattacctttg 307  Q
    ||||||||||||||||||||||||||||||||||||    
T  34789607 aacatgattcataaataaaatatcttattacctttg 34789572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 34812747 - 34812701
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagc 72  Q
    |||||||||||||||| ||| |||||||||||||||||||| |||||    
T  34812747 tacatttttattttatgacatacctcttttcacttacagagtcgagc 34812701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 15167399 - 15167344
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| ||| | |||||||||||||||| |||| | ||||||||||    
T  15167399 tttttattttattacggactttttttcacttacagagcagagccttcagattcgta 15167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 38843473 - 38843426
Alignment:
Q  38 ttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||| |||||||||||||||| |||||||||| |||| |||||||    
T  38843473 ttattacggacctcttttcacttagagagccgagcctccaaattcgta 38843426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 8103027 - 8103069
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagcc 68  Q
    |||||||||||||||||| || |||||||||| ||||||||||    
T  8103027 tacatttttattttattataggcctcttttcatttacagagcc 8103069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 38009137 - 38009085
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||| ||| |||||    
T  38009137 tttttattttattacggacttcttttcagttacagaaccgagcctccggattc 38009085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 5893130 - 5893181
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttcca 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  5893130 tacatttttattttattacggacctcttttcacttacagagccgagcctcca 5893181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 39329377 - 39329322
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||    
T  39329377 tttttattttattacggacctcttttcacttacagaaccgagcctccaaattcgta 39329322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 52468407 - 52468462
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||    
T  52468407 tttttattttattacagacctcttttcacctacagagccgagcctccgaattcgta 52468462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 24614077 - 24614135
Alignment:
Q  31 ttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaa 89  Q
    |||||||||||||| | |||||||||||||||||||| || | ||||||||||||||||    
T  24614077 ttttattttattacgggcctcttttcacttacagagctgaacctccagattcgtaagaa 24614135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 11906891 - 11906832
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| | |||||||||||||| | |||||||| |||  |||||||    
T  11906891 tacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgta 11906832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 36118444 - 36118389
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||   |||||||||||||||| ||||||||||||  |||||||    
T  36118444 tttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcgta 36118389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 39655238 - 39655171
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgacccta 97  Q
    |||||||||||||||   ||||||||||| ||||||| ||||| |||||||| ||| ||| |||||||    
T  39655238 tttttattttattacgagcctcttttcacctacagagtcgagcctccagatttgtaggaacgacccta 39655171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 27112154 - 27112202
Alignment:
Q  33 ttattttattacagacctcttttcacttacagagccgagcttccagatt 81  Q
    |||||||||||| |  ||||||||||||||||| |||||| ||||||||    
T  27112154 ttattttattacgggtctcttttcacttacagaaccgagcctccagatt 27112202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 26917715 - 26917650
Alignment:
Q  31 ttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    |||||||||||||| ||||||||||||||||||||| | ||| || ||||||||||||| ||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaacgaccct 26917650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 23020473 - 23020415
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||    
T  23020473 tacatttttattttattacggacctcttttcacttacagaaccg-gcctccagattcgta 23020415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 23859190 - 23859245
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||||  |||||||||||||||||| ||||| |||| |||||||    
T  23859190 tttttattttattacaggtctcttttcacttacagagtcgagcctccaaattcgta 23859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 23744884 - 23744968
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||||        |||||||||||||| |||| | |||||||||||||| ||||| |||| |||| |||||||    
T  23744884 tagaacattgttctttttaaaaaaatacatttttatttttttacgggcctcttttcacttatagagctgagcctccaaattcgta 23744968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 38971365 - 38971424
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| |  ||||||||||||||| |||||||  || |||||||||    
T  38971365 tacatttttattttattacgggtctcttttcacttacaaagccgagtctctagattcgta 38971424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 2611246 - 2611180
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    ||||||||||||||||  ||||||||||||| |||| |||||| ||| ||||| || ||| ||||||    
T  2611246 tttttattttattacaagcctcttttcacttgcagaaccgagcctccggattcataggaacgaccct 2611180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 12419477 - 12419428
Alignment:
Q  33 ttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    |||||||||||| | |||||||||||||||| |||||||| ||| |||||    
T  12419477 ttattttattacgggcctcttttcacttacaaagccgagcctccggattc 12419428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 12694794 - 12694854
Alignment:
Q  29 atttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaa 89  Q
    |||||||||||||||| |  |||||||||||||||||||||||| ||| ||||||||||||    
T  12694794 atttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaa 12694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 21665691 - 21665632
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| | ||||||||||||    
T  21665691 tacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgta 21665632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 44914894 - 44914848
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagc 72  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  44914894 tacatttttattttattacggacctcttttcacttacagagctgagc 44914848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 16097095 - 16097188
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgacc 94  Q
    |||||||||||||||||        ||||| ||||||||||||| | || |||||||||||||||||||||| |||| ||||||| ||| ||||    
T  16097095 tagaacattgttcttttaaacaaaatacatatttattttattacgggccacttttcacttacagagccgagcctccaaattcgtaggaacgacc 16097188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 10252532 - 10252591
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaa 89  Q
    ||||||||||||||||  ||||||||||||||| | ||||||| ||| ||||||||||||    
T  10252532 tttttattttattacacgcctcttttcacttaccgtgccgagcctcctgattcgtaagaa 10252591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13800559 - 13800489
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgag 71  Q
    |||||||||||||||||        |||||||||||||||||||  |||||||||||||||||||| ||||    
T  13800559 tagaacattgttctttttaaaaaaatacatttttattttattacgaacctcttttcacttacagagtcgag 13800489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 12134019 - 12133967
Alignment:
Q  33 ttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||| |||||||||||||||||||| |||||| ||  ||||||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccgagcctctggattcgta 12133967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 37182760 - 37182812
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    ||||||||||||||| |  |||||||||||||||||||||||| ||| |||||    
T  37182760 tttttattttattacgggtctcttttcacttacagagccgagcctccggattc 37182812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 38400914 - 38400978
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgacc 94  Q
    ||||||||||||| | |  |||||||||||||||||||||| ||| | |||||||||||| ||||    
T  38400914 tttttattttattgcgggtctcttttcacttacagagccgaactttcggattcgtaagaacgacc 38400978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 42029261 - 42029317
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    ||||||||||| |||||||  ||||||||||||||||| | |||||| |||||||||    
T  42029261 tacatttttatattattacgaacctcttttcacttacaaaaccgagcctccagattc 42029317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 11952575 - 11952520
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| |  ||||||||||||||||| |||||| | ||||||||||    
T  11952575 tttttattttattacgggtctcttttcacttacagaaccgagccttcagattcgta 11952520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 24035560 - 24035465
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    |||||||||||||||||        ||| ||||||||||||||| | | |||||||||||||| |  ||||| ||| |||||||| ||||||||||    
T  24035560 tagaacattgttcttttaaaagaaatacgtttttattttattacgggcatcttttcacttacaaaatcgagcatccggattcgtaggaatgaccct 24035465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 11912742 - 11912676
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    ||||||||||||||| ||  |||||||||||| |||||||||| |||  ||| ||||||||| ||||    
T  11912742 tttttattttattacggatatcttttcacttatagagccgagcctccgaatttgtaagaatggccct 11912676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 28425697 - 28425660
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttaca 63  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28425697 tacatttttattttattacggacctcttttcatttaca 28425660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 37622344 - 37622308
Alignment:
Q  27 acatttttattttattacagacctcttttcacttaca 63  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  37622344 acatttttattttattacataccttttttcacttaca 37622308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 206479 - 206436
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccg 69  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  206479 tacatttttattttattacaaacctcttttcacttacagagccg 206436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 45758620 - 45758679
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||| ||  ||||||||    
T  45758620 tacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcgta 45758679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 43235757 - 43235720
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttaca 63  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  43235757 tacatttttattttattacaggcctcttttcacttaca 43235720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 5533436 - 5533495
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| |  |||||||||||||||||| | ||| ||| ||||||||    
T  5533436 tacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgta 5533495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 6221803 - 6221859
Alignment:
Q  29 atttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||| |  ||||||||| ||||||| |||||  ||||||||||||    
T  6221803 atttttattttattacgggtctcttttcatttacagaaccgagtctccagattcgta 6221859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 40201 - 40257
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    |||||||||||||||||||  ||||||||||||||||||||| || | |||||||||    
T  40201 tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattc 40257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 138261 - 138317
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    |||||||||||||||||||  ||||||||||||||||||||| || | |||||||||    
T  138261 tacatttttattttattacgaacctcttttcacttacagagcagaacctccagattc 138317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 35080756 - 35080700
Alignment:
Q  29 atttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||| | ||||||||||||||||||| ||||| || |||||||||    
T  35080756 atttttattttattacggccctcttttcacttacagagtcgagcctctagattcgta 35080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 2530885 - 2530826
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||||||| | ||||||||||||||||||||| | | | ||||||||||    
T  2530885 tacatttttattttattacgggcctcttttcacttacagagccaaaccttcagattcgta 2530826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 34425991 - 34426075
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||||        ||||||||||||||||||||   || |||||||||||||| |||||| | ||||||||||    
T  34425991 tagaacattgttcttttaaaaaagatacatttttattttattacatgtcttttttcacttacagaaccgagccttcagattcgta 34426075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 2412204 - 2412239
Alignment:
Q  33 ttattttattacagacctcttttcacttacagagcc 68  Q
    |||||||||||| |||||||||||||||||||||||    
T  2412204 ttattttattacggacctcttttcacttacagagcc 2412239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10407549 - 10407644
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    |||||||||||||||||        ||| ||||||||||||||  |||||||||||||||| ||| |||| | || ||||||||| ||| ||||||    
T  10407549 tagaacattgttcttttaaaaaaaatacttttttattttattatggacctcttttcacttatagaaccgaacctctagattcgtaggaacgaccct 10407644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 40794309 - 40794254
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||   ||||||||||||||||||||||||| |||  |||||||    
T  40794309 tttttattttattacgagcctcttttcacttacagagccgagcctccgaattcgta 40794254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 11242302 - 11242236
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    |||||||||||||||    |||||||||||||||||||||||| ||| ||||| || ||| ||||||    
T  11242302 tttttattttattacgagtctcttttcacttacagagccgagcctccggattcataggaacgaccct 11242236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 27530608 - 27530666
Alignment:
Q  27 acatttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    |||||||||||||||||| | |||||||||||||| ||| |||||| || | |||||||    
T  27530608 acatttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgta 27530666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10543785 - 10543829
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacagagccga 70  Q
    ||||||||||||||||||| || ||||||||||||| ||| ||||    
T  10543785 tacatttttattttattacggatctcttttcacttatagaaccga 10543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 26718932 - 26718880
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    ||||||||||||||| |  ||||||||||||||||| |||||| ||| |||||    
T  26718932 tttttattttattacgggtctcttttcacttacagaaccgagcctccggattc 26718880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 26988676 - 26988624
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattc 82  Q
    ||||||||||||||| |  ||||||||||||||||| |||||| ||| |||||    
T  26988676 tttttattttattacgggtctcttttcacttacagaaccgagcctccggattc 26988624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 1471 - 1526
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| ||| |||||||||||||||||| |||| | ||||||||||    
T  1471 tttttattttattacggacttcttttcacttacagagcagagccttcagattcgta 1526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 39045 - 39100
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgta 85  Q
    ||||||||||||||| |||||||||| |||||||||  ||||| ||||||||||||    
T  39045 tttttattttattacggacctctttttacttacagaatcgagcctccagattcgta 39100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 32319147 - 32319108
Alignment:
Q  26 tacatttttattttattacagacctcttttcacttacaga 65  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  32319147 tacatttttattttattacagacctattttcacttacaga 32319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4478 - 4407
Alignment:
Q  1 tagaacattgttcttttnnnnnnnntacatttttattttattacagacctcttttcacttacagagccgagc 72  Q
    |||||||||||||||||        ||||||||||||||||||| | ||||| ||||||| |||||||||||    
T  4478 tagaacattgttcttttaataaaaatacatttttattttattacgggcctctattcacttgcagagccgagc 4407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 20611908 - 20611974
Alignment:
Q  30 tttttattttattacagacctcttttcacttacagagccgagcttccagattcgtaagaatgaccct 96  Q
    |||||||||| |||  | ||||||||||||||||||||||||| |||  ||||||| ||| ||||||    
T  20611908 tttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccct 20611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 21183684 - 21183650
Alignment:
Q  29 atttttattttattacagacctcttttcacttaca 63  Q
    |||||||||||||||| ||||||||||||||||||    
T  21183684 atttttattttattactgacctcttttcacttaca 21183650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 2477568 - 2477520
Alignment:
Q  33 ttattttattacagacctcttttcacttacagagccgagcttccagatt 81  Q
    |||||||||||| |  ||||||||||||||||| |||||| ||||||||    
T  2477568 ttattttattacgggtctcttttcacttacagaaccgagcctccagatt 2477520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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