View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_low_16 (Length: 284)
Name: NF2961_low_16
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 43767376 - 43767635
Alignment:
| Q |
18 |
gtaaatgttttagtggacnnnnnnnngattaagttgattgtagtagaattatatgtttttgattatagtatggtttcttaacacatgcattaatctttct |
117 |
Q |
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| T |
43767376 |
gtaaatgttttagtggacaaaaaaaagattaagttgattgtagtagaattatatgtttttgattatagtatggtttcttaacacatgcattaatctttct |
43767475 |
T |
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| Q |
118 |
ttttagaagtgaaggttgttgtcaacttttaagctcctttgcttatctatttcacagaaatatagataaagacacataaaatataaaaagttcaatgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43767476 |
ttttagaagtgaaggttgttgtcaacttttaagctcctttgcttatctatttcacataaatatagataaagacacataaaatataaaaagttcaatgtca |
43767575 |
T |
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| Q |
218 |
tttaaactttagtaacacttggaactttcctctcctccatgtcttgtctaattcatctca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43767576 |
tttaaactttagtaacacttggaactttcctctcctccatgtcttgtctaattcatctca |
43767635 |
T |
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