View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_low_19 (Length: 275)
Name: NF2961_low_19
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 39054897 - 39055142
Alignment:
| Q |
17 |
aaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttc |
116 |
Q |
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| T |
39054897 |
aaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttc |
39054996 |
T |
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| Q |
117 |
tattgacgagaagctgctgtgttgaagataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacatgtcagatctgagagaaatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39054997 |
tattgacgagaagctgctgtgttgaagataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacatgtcagatctgagaggaatc |
39055096 |
T |
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| Q |
217 |
tccttgcagaggttgacagcaattgcatcgtcaaactttattgttc |
262 |
Q |
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| T |
39055097 |
tccttgcagaggttgacagcaattgcatcgtcaaactttattgttc |
39055142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 30394501 - 30394422
Alignment:
| Q |
18 |
aagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcattt |
97 |
Q |
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| T |
30394501 |
aagactactgattctgtatacgcaatgaaaaaactaaagaaatcagagatgcttcgcagaggacaggtttatagtcattt |
30394422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 30394315 - 30394243
Alignment:
| Q |
187 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattg |
259 |
Q |
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| T |
30394315 |
aggttgaacatgtcaaagcggaaaggaatctcctcgcagaggttgacagcaattgcattgtcaaactttattg |
30394243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 15924148 - 15924073
Alignment:
| Q |
187 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattgttc |
262 |
Q |
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| T |
15924148 |
aggttgaacatgtcaaagctgagaggaaccttcttgcagaagttgatagcaattgcattgtaaaactttattgttc |
15924073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 15871283 - 15871208
Alignment:
| Q |
187 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattgttc |
262 |
Q |
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| T |
15871283 |
aggttgaatatgtcaaatctgaaaggaaccttcttgcagaagttgatagcaattgcattgtaaaactttattgttc |
15871208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 19700217 - 19700295
Alignment:
| Q |
19 |
agactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcattt |
97 |
Q |
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| T |
19700217 |
agactactggtcatgtacaagcaatgaaaaagctaaagacatcagagatgcttcatagaagctaggtttacagtcattt |
19700295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 15871411 - 15871359
Alignment:
| Q |
33 |
gtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
85 |
Q |
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| T |
15871411 |
gtatatgccatgaagaagcttcagaaatcagagatgcttcgaagaggacaggt |
15871359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 15924271 - 15924219
Alignment:
| Q |
33 |
gtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
85 |
Q |
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|||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
15924271 |
gtatatgctatgaagaagcttaagaaatcagagatgcttcgtagaggacaggt |
15924219 |
T |
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