View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2961_low_3 (Length: 533)
Name: NF2961_low_3
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 46629331 - 46629867
Alignment:
| Q |
1 |
tgtgccatcccatcctctctgttgttaatgaacttcatatgtatattccaatggtaattacaatggagtagctgattgaattatcatttgattgtaacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46629331 |
tgtgccatcccatcctctctgttgttaatgaacttcatatgtatattccaatggtaattataatggagtagctgattgaattatcatttgattgtaacat |
46629430 |
T |
|
| Q |
101 |
--------tatttgaacatttatgcccgtatcagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacaga |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629431 |
acaacatttatttgaacatttatgcccgtatcagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacaga |
46629530 |
T |
|
| Q |
193 |
tttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629531 |
tttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggat |
46629630 |
T |
|
| Q |
293 |
tggtaacaagaagggagaccttactaggcttggtgtcgaacctgggaagaacagtcggacgttttcagcaccaacttgcaaatctttgtctactcttgga |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46629631 |
tggtaacaagaagggagaccttactaggcttggtgtcgaacctgggaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttgga |
46629730 |
T |
|
| Q |
393 |
ccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaa |
492 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629731 |
ccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaa |
46629830 |
T |
|
| Q |
493 |
gaggatggcactctgagcaaacaaggtatcgatgatg |
529 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |
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|
| T |
46629831 |
gaggatggcactctgagcaaacaaagtatcgaggatg |
46629867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 140 - 524
Target Start/End: Original strand, 46637303 - 46637681
Alignment:
| Q |
140 |
tatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacata |
239 |
Q |
| |
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||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
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|
| T |
46637303 |
tatatatataatttgtttcagtcctcactttgcttatattt---atacacagatttcaaagtcgtttatggagggcggaacttctctagaagattacata |
46637399 |
T |
|
| Q |
240 |
tcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctggga |
339 |
Q |
| |
|
|||| ||||||||||||||||||| | ||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| | |||||||||| |
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|
| T |
46637400 |
tcttttttgaagtctactgttggacttggcgtacttgtggaagctgtaggtattggtaaggagaagggagacctcactaggcttggcatggaacctggga |
46637499 |
T |
|
| Q |
340 |
agaacagtcgga-cgttttcagcaccaacttgcaaatctttgtctactcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagca |
438 |
Q |
| |
|
|| || || | | ||||| |||||||| ||||||||||||||||| ||||||||| ||||| ||| | |||| |||||| ||||||||||||||||| |
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|
| T |
46637500 |
aggac-gttgaagcgtttccagcaccagcttgcaaatctttgtcttctcttggacttagtgagataattcaatatttgac---aggatttcggctgagca |
46637595 |
T |
|
| Q |
439 |
aaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaggtatcga |
524 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| ||||| || | |||||| ||||||||||||||| ||| ||||||| |
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|
| T |
46637596 |
aaaccaaaagtaatgatctcttctgggaagctgtttggccccgcttgctgggaagaggttggcactctgagcaaccaaagtatcga |
46637681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 139 - 526
Target Start/End: Original strand, 46618596 - 46618977
Alignment:
| Q |
139 |
ttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacat |
238 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||| | |||| |
|
|
| T |
46618596 |
ttatatatatcatatgtttcagtcctcactttacttatattt---atacacagatttcaaagtcgtttatggagggaagaacttctctagaagattacac |
46618692 |
T |
|
| Q |
239 |
atcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctggg |
338 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||||| ||||| |||||||| ||| |||||||||||||||| |||| | ||||||||| |
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|
| T |
46618693 |
atcttctttgaagtctactgttggacttggtgtacttgtggaagctgtaggtattggtaaggagatgggagaccttactaggattggcatggaacctggg |
46618792 |
T |
|
| Q |
339 |
aagaacagtcggacgttttcagcaccaacttgcaaatctttgtctactcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagca |
438 |
Q |
| |
|
||| || || |||| ||| |||| |||||||| |||||||| |||||||||| ||||| ||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
46618793 |
aaggacgttcaagcgttgccagtaccagcttgcaaagctttgtcttctcttggacctagtgagataattcaatatttgac---aggatttcggctgagca |
46618889 |
T |
|
| Q |
439 |
aaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaggtatcgatg |
526 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
46618890 |
aaaccaaaagtaatgatctcttctgggaggctgtttggccccgcttactggcaagaggttggcactctgagcaaccaaagtatcgatg |
46618977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 210 - 522
Target Start/End: Complemental strand, 46643439 - 46643124
Alignment:
| Q |
210 |
gagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggag |
309 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||| | |||||||| ||||||||| |
|
|
| T |
46643439 |
gagggaagaacttctctagaagaatacatatcttatttgaagtctactgctggacttggcgttcttgtggaagcagttagtattggtaaggagaagggag |
46643340 |
T |
|
| Q |
310 |
accttactaggcttggtgtcgaacctgggaagaacagtc---ggacgttttcagcaccaacttgcaaatctttgtctactcttggaccgagtgatatatt |
406 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||| || | |||||||||| |||||||||| || ||||| || ||||||| ||||||||| | |
|
|
| T |
46643339 |
accttactaggcttgacgtggaacctaggaagaacagtcctggggcattttcagcacaaacttgcaaagctctgtcttcttttggacctagtgatataat |
46643240 |
T |
|
| Q |
407 |
acaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttctgggaagctgtttggccgcgcttactagcaagaggatggcactct |
506 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| | | || ||||||||||||||||||||||| || ||||| |||||||| ||||||||| |
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|
| T |
46643239 |
tcaatccttgacaggaggatttcagctgagcaaaaccaaaagtgacgatctcttctgggaagctgtttggcctcgattactggcaagaggttggcactct |
46643140 |
T |
|
| Q |
507 |
gagcaaacaaggtatc |
522 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
46643139 |
gagcaaccaatgtatc |
46643124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 148 - 320
Target Start/End: Complemental strand, 46176773 - 46176604
Alignment:
| Q |
148 |
tcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttcttt |
247 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| | |||||| ||| | || ||||| ||| |||||| ||||| |||||| ||| |||||||||||||||| |
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|
| T |
46176773 |
tcatttgcttcagtcctcactttg--tgtatat-ttatactcaggtgtctaagtcatttgtggaggacagaacttctcttgaagaatacatatcttcttt |
46176677 |
T |
|
| Q |
248 |
gaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactagg |
320 |
Q |
| |
|
|||||||| ||||||| | || ||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
46176676 |
gaagtctattgttggacttggtgtccttgtggaagcagtaggtattggtaaggagaagaaagaccttactagg |
46176604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 524
Target Start/End: Complemental strand, 46176561 - 46176498
Alignment:
| Q |
461 |
ctgggaagctgtttggccgcgcttactagcaagaggatggcactctgagcaaacaaggtatcga |
524 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| ||||||||||||||| ||| ||||||| |
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|
| T |
46176561 |
ctgggaagctgtttggccccgcttgttggcaagaggttggcactctgagcaaccaaagtatcga |
46176498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 46176602 - 46176561
Alignment:
| Q |
377 |
tttgtctactcttggaccgagtgatatattacaatctttgac |
418 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
46176602 |
tttgtcttctcttggaccgagtgaaataatacaatctttgac |
46176561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 182 - 512
Target Start/End: Complemental strand, 15769882 - 15769549
Alignment:
| Q |
182 |
ttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaa |
281 |
Q |
| |
|
|||||| ||| |||| ||||| | | ||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
15769882 |
ttatactcaggtttctaagtcatatgtggagggaagaacttctctagaagaatacatatcttctttgaagtctattgttggagttggtgttcttgtggaa |
15769783 |
T |
|
| Q |
282 |
gcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctgggaagaacagtcgga---cgttttcagcaccaacttgcaaatctt |
378 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||| |||||||||||||||| ||| |
|
|
| T |
15769782 |
gcagtaggtattggtaaggagaagggagaccttactaggcttggtgtcgagcctgtgaagaacagtcgtaaggcgtttttagcaccaacttgcaaagctt |
15769683 |
T |
|
| Q |
379 |
tgtctactcttggaccgagtgatatattacaatctttgacaggaggatttcggctgagcaaaaccaaaaataatgaactcttctgggaagctgtttggcc |
478 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
15769682 |
tgtcttctcttggacttagtgatataatacaatctttgactggagggtttcggctgagcaaaaccaaatgtaatgatctcttctgggaagctgtttggcc |
15769583 |
T |
|
| Q |
479 |
gcgcttactagcaagaggatggcactctgagcaa |
512 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |
|
|
| T |
15769582 |
tcgcttactggcaagaggttggcactctgagcaa |
15769549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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