View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961_low_5 (Length: 426)

Name: NF2961_low_5
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961_low_5
NF2961_low_5
[»] chr8 (5 HSPs)
chr8 (1-406)||(25890808-25891217)
chr8 (1-198)||(18309115-18309312)
chr8 (1-91)||(136664-136754)
chr8 (274-346)||(37718866-37718938)
chr8 (1-52)||(37322307-37322358)
[»] chr7 (10 HSPs)
chr7 (1-337)||(17506963-17507299)
chr7 (1-337)||(17545915-17546251)
chr7 (1-349)||(15644963-15645311)
chr7 (333-419)||(17504533-17504619)
chr7 (333-419)||(17548595-17548681)
chr7 (121-215)||(551733-551827)
chr7 (274-349)||(551599-551674)
chr7 (165-234)||(45976574-45976643)
chr7 (271-339)||(8771450-8771518)
chr7 (310-350)||(39694526-39694566)
[»] chr1 (2 HSPs)
chr1 (1-242)||(39584764-39585005)
chr1 (271-349)||(9991072-9991150)
[»] chr6 (6 HSPs)
chr6 (1-349)||(7956698-7957046)
chr6 (1-237)||(18588099-18588334)
chr6 (1-80)||(13649325-13649404)
chr6 (252-350)||(15602321-15602419)
chr6 (306-350)||(14528424-14528468)
chr6 (305-353)||(26513774-26513822)
[»] chr3 (5 HSPs)
chr3 (1-399)||(14853656-14854046)
chr3 (1-96)||(26535788-26535883)
chr3 (265-339)||(45684186-45684260)
chr3 (304-353)||(17700285-17700334)
chr3 (304-353)||(53941368-53941417)
[»] chr2 (3 HSPs)
chr2 (1-124)||(13059670-13059793)
chr2 (265-339)||(28400606-28400680)
chr2 (310-350)||(2207867-2207907)
[»] chr5 (3 HSPs)
chr5 (1-237)||(32239524-32239760)
chr5 (271-339)||(3168581-3168649)
chr5 (304-353)||(9724723-9724772)
[»] chr4 (3 HSPs)
chr4 (265-339)||(46639046-46639120)
chr4 (304-353)||(30821779-30821828)
chr4 (118-231)||(47129495-47129608)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 25890808 - 25891217
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaa---- 96  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||        
T  25890808 tcattccatatagtccaaacggtcaaaagccaaataagctgaagaaaagatcgtcttgatctcacaccacctgtatagtgaataaactgaagaaaaaaaa 25890907  T
Q  97 tgatcagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgac 196  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  25890908 tgatcagagatttgttgattatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgac 25891007  T
Q  197 tagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacg 296  Q
     |||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||  ||||||||||||||||  ||||||||    
T  25891008 gagcatcctccacctggccacaccccgaaatacacaaagaatcggccactttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacg 25891107  T
Q  297 gagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagc 396  Q
    ||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||  |||||  |||||||| ||||||||||| ||||||||| |||||||    
T  25891108 gagcagtcgccatgcaaagattgacacctttagaggaacctgattatgccaaattaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagc 25891207  T
Q  397 atataataca 406  Q
    ||||||||||    
T  25891208 atataataca 25891217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 18309312 - 18309115
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  18309312 tcattccatatagtccaaactgtcaaaagccaaataagctgaagaaaagaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgat 18309213  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 198  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18309212 cagagatttgttgactatcaacaccatcaaaaccaatctaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 136664 - 136754
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaa 91  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  136664 tcattccatatagtccaaacggtcaaaaggcaaataagctgaagaaaagactgtcttgatctcacaccacctgtatagtgaataaactgaa 136754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  274 gatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgcc 346  Q
    ||||| |||||||| ||||||||||| || ||||| ||||||||||||||||| |  |||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37322307 - 37322358
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagacc 52  Q
    |||||||||||  |||||||||||| |||||||| || ||||||||||||||    
T  37322307 tcattccatatgatccaaacggtcagaagccaaataaactgaagaaaagacc 37322358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 17507299 - 17506963
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  17507299 tcattccaaatagtccaacctgtcaaaagccaaataagctgaagaaaagaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgat 17507200  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17507199 ccgatatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 17507100  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagt 300  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||     
T  17507099 atcctccacctggccacaccccgaaatacaccaagaatcggtcacattaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagc 17507000  T
Q  301 agtcgccacgcaaaaattgacaccttaagaggaacct 337  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  17506999 agtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 17545915 - 17546251
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  17545915 tcattccaaatagtccaacctgtcaaaagccaaataagctgaagaaaagaccgtcttgatctcacaccacctgtatagtgaataaactgaaaaaaatgat 17546014  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17546015 ccgatatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 17546114  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagt 300  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  |||||||||||     
T  17546115 atcctccacctggccacaccccgaaatacaccaagaatcggtcacattaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagc 17546214  T
Q  301 agtcgccacgcaaaaattgacaccttaagaggaacct 337  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  17546215 agtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 15644963 - 15645311
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    ||||| ||||| ||||||||||||| ||| |||| ||||||||||||||||| ||||||| ||| |  ||||||||||||  |||| |||| ||||||||    
T  15644963 tcatttcatatggtccaaacggtcagaagtcaaataagctgaagaaaagaccatcttgatttcataacacctgtatagtgagtaaattgaataaaatgat 15645062  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    |||| |||| ||||  ||||||||||||||||||||||||  ||||||  |||| |||||    ||||||||||||||| |||| ||||||||||  |||    
T  15645063 cagaaatttcttgatgatcaacaccatcaaaaccaatccatgaccgcattagaggccacaatgacccaaagcaaggacaagagaaaaacaaatgatgagc 15645162  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagt 300  Q
    ||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||||||||||| ||||||||||||||| |    |||||||||     
T  15645163 atcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgccaagttagatttagtaggaaggtaatcacggagc 15645262  T
Q  301 agtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaa 349  Q
    || ||||| ||||| | ||||||||| || |||| ||| ||||||||||    
T  15645263 agccgccaagcaaagactgacacctttagtggaatctgtttatgccaaa 15645311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 17504619 - 17504533
Alignment:
Q  333 aacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacagtgaacgagcaga 419  Q
    |||||||||||||||||  || ||  |||||||| ||||||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacaga 17504533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 419
Target Start/End: Original strand, 17548595 - 17548681
Alignment:
Q  333 aacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacagtgaacgagcaga 419  Q
    |||||||||||||||||  || ||  |||||||| ||||||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacaga 17548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 551827 - 551733
Alignment:
Q  121 acaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggcc 215  Q
    |||||||| |||||||||||| ||||||| |||| |||||||  ||| ||||| | |||| | | ||| ||||||| ||||||||||||||||||    
T  551827 acaccatcgaaaccaatccaagaccgcactagaggccacagcgacccgaagcacgaacacaacaaaaaaaaatgacgagcatcctccacctggcc 551733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  274 gatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaa 349  Q
    ||||| ||||| || ||||||||||  || ||||| ||||||||||||||||| | ||||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 45976643 - 45976574
Alignment:
Q  165 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaa 234  Q
    ||||||||||| |||||| | |||||| |||| ||||||||||||||| || || || |||| |||||||    
T  45976643 cccaaagcaagtacacgacaaaaacaagtgacgagcatcctccacctgaccacatccagaaagacacaaa 45976574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 8771450 - 8771518
Alignment:
Q  271 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 339  Q
    |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  8771450 ttagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 8771518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 39694526 - 39694566
Alignment:
Q  310 gcaaaaattgacaccttaagaggaacctgattatgccaaac 350  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  39694526 gcaaaaatagacaccttaagaggaacctgtttgtgccaaac 39694566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39584764 - 39585005
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39584764 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaattgaacaaaatgat 39584863  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  39584864 cagagatttgttgactatcaacaccatcacaaccaatccaaaaccgcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagc 39584963  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggt 242  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  39584964 atcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 349
Target Start/End: Original strand, 9991072 - 9991150
Alignment:
Q  271 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaa 349  Q
    |||||||||||||| |   ||||||| || || ||||| |||||||| | ||||||||| |||||||| ||||||||||    
T  9991072 ttagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 7957046 - 7956698
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    ||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||| ||| |  ||||||||||||  ||||||||| ||||||||    
T  7957046 tcattccatatggttcaaacggtcagaagccaaataagctgaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaataaaatgat 7956947  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    |||| |||| ||||  ||||||||||||||||||||| ||  ||||||| ||||||||||    ||||||||||||||| |||||||||||||||| |||    
T  7956946 cagaaatttcttgatgatcaacaccatcaaaaccaattcacgaccgcactagagaccacaaggacccaaagcaaggacatgagagaaacaaatgacgagc 7956847  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagt 300  Q
    ||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| ||||||| ||||||||||||||| |  |||||||||||     
T  7956846 atcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgccaagttagatttagtaggaaggcgatcacggagc 7956747  T
Q  301 agtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaa 349  Q
    |  ||||| ||||| | ||||||||| || |||||||| ||||||||||    
T  7956746 aaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 18588099 - 18588334
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||||||  |||||||||||| |||| ||| |||||||||||||||||| |||||| ||| |  |||||||||||| ||||| |||| ||||||||    
T  18588099 tcattccatatgatccaaacggtcagaagcgaaataagctgaagaaaagaccgccttgatttcataacacctgtatagtgaataaattgaataaaatgat 18588198  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    |||| |||| ||||   |||||||||||||||||||||||   |||||| | || |||||    |||||||||||  || || ||||| || |||| |||    
T  18588199 cagaaatttcttgatggtcaacaccatcaaaaccaatccacggccgcactaaaggccacaatgacccaaagcaagagcatgacagaaa-aagtgacgagc 18588297  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaa 237  Q
    |||||||||| |||| |||| ||||| ||||| ||||    
T  18588298 atcctccacccggccacacctcgaaacacacatagaa 18588334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13649404 - 13649325
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtg 80  Q
    |||||||||||  |||||| ||||| |||||||| |||||||| ||||||||| |||||| ||| |  ||||||||||||    
T  13649404 tcattccatatgatccaaatggtcataagccaaataagctgaataaaagaccgccttgatttcataacacctgtatagtg 13649325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 15602321 - 15602419
Alignment:
Q  252 aataccacgtgatgccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaac 350  Q
    ||||||||| | ||| | |||||| ||||| || ||||||||||| || |  ||||| |||||||| ||||||||||  ||||| || |||||||||||    
T  15602321 aataccacgggttgctaagttagacttagtgggaaatcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaac 15602419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 14528424 - 14528468
Alignment:
Q  306 ccacgcaaaaattgacaccttaagaggaacctgattatgccaaac 350  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||    
T  14528424 ccacgcaaaaactgagaccttcaaaggaacctgattatgccaaac 14528468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 26513774 - 26513822
Alignment:
Q  305 gccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 353  Q
    |||| |||||||| || ||||| ||||||||||| ||||||||||||||    
T  26513774 gccaagcaaaaatggaaacctttagaggaacctgcttatgccaaacaag 26513822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 14853656 - 14854046
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    ||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||| ||| |  ||||||||||||  ||||||||| ||||||||    
T  14853656 tcattccatatggtccaaacggttagaagccaaataagctgaagaaaagaccgtcttgatttcataacacctgtatagtgagtaaactgaataaaatgat 14853755  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
     ||| |||| ||||  ||||||||||||||||||||||||  ||||||| |||| |||||    ||||||||| ||||        |||||||||| |||    
T  14853756 tagaaatttcttgatgatcaacaccatcaaaaccaatccacgaccgcactagaggccacaatgacccaaagcagggac--------aacaaatgacgagc 14853847  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagt 300  Q
    |||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||||||||| |||||||||||||||    |||||||||||     
T  14853848 atcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggaggacgatcacggagc 14853947  T
Q  301 agtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcata 399  Q
    || ||||| ||||| | ||||||||| ||  ||||||| ||||||||||  |  || ||| ||||| ||||||||||| ||||||||| ||||||||||    
T  14853948 agccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctgagttgtgagcata 14854046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26535788 - 26535883
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaa 96  Q
    ||||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||| ||| || |||||||||||| |||||||||| ||||    
T  26535788 tcattccatgtggtccaaacgatcaaaagtcaaataagctgaagaaaagaccgtcttgatttcataccacctgtatagtgaataaactgaaaaaaa 26535883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 45684186 - 45684260
Alignment:
Q  265 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 339  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  45684186 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 45684260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 17700285 - 17700334
Alignment:
Q  304 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 353  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  17700285 cgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaag 17700334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 53941368 - 53941417
Alignment:
Q  304 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 353  Q
    ||||| |||||||| || ||||| ||||||||||| ||||||||||||||    
T  53941368 cgccatgcaaaaatggataccttcagaggaacctgcttatgccaaacaag 53941417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 13059670 - 13059793
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13059670 tcattccatatagtccaaacggtcaaaagccaaataagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaaaaaaatgat 13059769  T
Q  101 cagagatttgttgactatcaacac 124  Q
    ||||||||||||||||||||||||    
T  13059770 cagagatttgttgactatcaacac 13059793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 28400680 - 28400606
Alignment:
Q  265 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 339  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  28400680 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 28400606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 2207907 - 2207867
Alignment:
Q  310 gcaaaaattgacaccttaagaggaacctgattatgccaaac 350  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  2207907 gcaaaaatagacaccttaagaggaacctgtttgtgccaaac 2207867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32239524 - 32239760
Alignment:
Q  1 tcattccatatagtccaaacggtcaaaagccaaagaagctgaagaaaagaccgtcttgatctcacactacctgtatagtggataaactgaacaaaatgat 100  Q
    |||||| ||||  |||||||||||| ||| |||| |||||||||||| |||||||||||| ||| |  ||||||||||||   |||||||| ||| ||||    
T  32239524 tcattctatatgatccaaacggtcagaagtcaaataagctgaagaaatgaccgtcttgatttcataacacctgtatagtgagaaaactgaataaagtgat 32239623  T
Q  101 cagagatttgttgactatcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagc 200  Q
    |||| |||| ||||   |||||||||||||||||||||||  ||||| | | || |||||    |||||| ||||  || |||||||||||||||| |||    
T  32239624 cagaaatttcttgatggtcaacaccatcaaaaccaatccacgaccgcgctaaaggccacaatcacccaaaacaagagcatgagagaaacaaatgacgagc 32239723  T
Q  201 atcctccacctggccgcaccccgaaatacacaaagaa 237  Q
    |||||||||||| || |||||||||| ||||| ||||    
T  32239724 atcctccacctgaccacaccccgaaacacacatagaa 32239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 3168649 - 3168581
Alignment:
Q  271 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 339  Q
    |||| ||| |||||||||||||| ||||  || ||||||||||||||||| ||||| | ||||||||||    
T  3168649 ttagctttcgtaggtaatcgatctcggataagccgccacgcaaaaattgaaaccttcaaaggaacctga 3168581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 9724772 - 9724723
Alignment:
Q  304 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 353  Q
    ||||| ||||||||||| |||||||| ||||| || ||||||||||||||    
T  9724772 cgccaagcaaaaattgagaccttaagtggaacatgtttatgccaaacaag 9724723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 46639120 - 46639046
Alignment:
Q  265 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 339  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  46639120 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 46639046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 30821828 - 30821779
Alignment:
Q  304 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 353  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  30821828 cgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaag 30821779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 47129495 - 47129608
Alignment:
Q  118 tcaacaccatcaaaaccaatccaaaaccgcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgc 217  Q
    ||||||||||| |||||||||||  ||||||| | || ||||| |  ||||||||| || ||| | |  ||||| |||| ||||||||||||||||| ||    
T  47129495 tcaacaccatcgaaaccaatccaggaccgcactaaaggccacaacgacccaaagcacgggcacaacaagaacaagtgacaagcatcctccacctggctgc 47129594  T
Q  218 accccgaaatacac 231  Q
    | || |||| ||||    
T  47129595 aacctgaaacacac 47129608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University