View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2961_low_6 (Length: 419)
Name: NF2961_low_6
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2961_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 64 - 284
Target Start/End: Complemental strand, 35502429 - 35502209
Alignment:
| Q |
64 |
agaatcttccattttcgttttctcgatttcacattacatgcatcactcaaacttttcgtaattaagnnnnnnnnccctaatttattttactattttcttt |
163 |
Q |
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| T |
35502429 |
agaatcttccattttcgttttctcgatttcacattacatgcatcactcaaacttttcgtaattaagaaaaaaaaccctaatttattttactattttcttt |
35502330 |
T |
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| Q |
164 |
ctctttattcatcgctaatccataattattatgattatctttattagcattctaattatctatttgttttgtaaatattttcaaaattagggtgtgtggt |
263 |
Q |
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| T |
35502329 |
ctctttattcatcgctaatccctaattattatgattatcgttattagcattctaattatctatttgttttgtaaatattttcaaaattagggtgtttggt |
35502230 |
T |
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| Q |
264 |
atttgtttctcgtatcaaaac |
284 |
Q |
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| T |
35502229 |
atttgtttctcgtatcaaaac |
35502209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 398
Target Start/End: Complemental strand, 35502213 - 35502143
Alignment:
| Q |
328 |
aaaacggttattttgatgcttcattgtgtccgacgtgtcactgtagaactcgaatttctttgttccaatgt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
35502213 |
aaaacggttattttgatgcttcattgtgtccgacgtgtcactgtagaactcgaatttatctgttccaatgt |
35502143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 35502476 - 35502442
Alignment:
| Q |
5 |
aatatcaccctcggcggccgtggcggcactttcag |
39 |
Q |
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| T |
35502476 |
aatatcaccctcggcggccgtggcggcactgtcag |
35502442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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