View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2961_low_8 (Length: 378)

Name: NF2961_low_8
Description: NF2961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2961_low_8
NF2961_low_8
[»] chr5 (2 HSPs)
chr5 (1-222)||(21903107-21903328)
chr5 (266-363)||(21902964-21903062)
[»] chr4 (3 HSPs)
chr4 (1-222)||(7653322-7653543)
chr4 (22-222)||(9109685-9109870)
chr4 (266-368)||(7653188-7653291)
[»] chr3 (1 HSPs)
chr3 (21-222)||(20592369-20592570)
[»] chr7 (2 HSPs)
chr7 (1-222)||(11362466-11362687)
chr7 (280-350)||(11362746-11362816)
[»] chr6 (3 HSPs)
chr6 (1-222)||(4059418-4059636)
chr6 (280-350)||(4059695-4059765)
chr6 (12-73)||(7863572-7863633)
[»] chr2 (2 HSPs)
chr2 (90-222)||(33172140-33172264)
chr2 (266-368)||(33172309-33172412)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21903328 - 21903107
Alignment:
Q  1 tgtctctctgcatcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21903328 tgtctctctacatcttcaacgtctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttt 21903229  T
Q  101 tgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttcta 200  Q
    |||||||| |||||||| ||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  21903228 tgattttcattttgaaattgtttctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaatcgtaatttcta 21903129  T
Q  201 ggtaaatcttctaatctatgtg 222  Q
    ||||||||||||||||| ||||    
T  21903128 ggtaaatcttctaatctctgtg 21903107  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 21903062 - 21902964
Alignment:
Q  266 gaattgttctatgtaa-ttttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaat 363  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21903062 gaattgttctaggtaaattttaattgtaattatcaagtttgtgttgaatcgtaattttaattattataggtaaattgattttcgtttttgattttgaat 21902964  T

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Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7653543 - 7653322
Alignment:
Q  1 tgtctctctgcatcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653543 tgtctctctgcatcttcaacgtttgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttt 7653444  T
Q  101 tgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttcta 200  Q
    ||||||||||||||||| ||||||| || | |||||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  7653443 tgattttcgttttgaaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttcta 7653344  T
Q  201 ggtaaatcttctaatctatgtg 222  Q
    ||||||||||||||||| ||||    
T  7653343 ggtaaatcttctaatctctgtg 7653322  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 9109870 - 9109685
Alignment:
Q  22 tctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaaatgt 121  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  9109870 tctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt-tttttgttttgattttcattttgaaattgt 9109772  T
Q  122 ttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctatgt 221  Q
    |||| |  | ||||||              ||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||| |||    
T  9109771 ttctcaatagctatcg--------------cgccgtcaaaccgtgttccgtcatcgccgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgt 9109686  T

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Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 7653291 - 7653188
Alignment:
Q  266 gaattgttctatgtaat-tttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaatc 364  Q
    ||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7653291 gaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattttaattgttataggtaaattgattttcgtttttgattttgaatc 7653192  T
Q  365 tgtg 368  Q
    ||||    
T  7653191 tgtg 7653188  T

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Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 20592570 - 20592369
Alignment:
Q  21 gtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaaatg 120  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20592570 gtctctctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattg 20592471  T
Q  121 tttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctatg 220  Q
    ||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||    
T  20592470 tttctcagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctctg 20592371  T
Q  221 tg 222  Q
    ||    
T  20592370 tg 20592369  T

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Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11362466 - 11362687
Alignment:
Q  1 tgtctctctgcatcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatcctt-cttcaactaacttcaatctatgtatttttgtt 99  Q
    |||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11362466 tgtctcgctacatcttcaacgtcggtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtt 11362565  T
Q  100 ttgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttct 199  Q
    | ||||||| |||||||| |||||||  | | |||||||||| |||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  11362566 tcgattttcattttgaaattgtttctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttct 11362664  T
Q  200 aggtaaatcttctaatctatgtg 222  Q
    |||||||||||||||||| ||||    
T  11362665 aggtaaatcttctaatctctgtg 11362687  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 11362746 - 11362816
Alignment:
Q  280 aattttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtt 350  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11362746 aattttaattgtaattatcaactttgtgttgaatggtaattttaattgttataggtaaattgattttcgtt 11362816  T

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Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4059418 - 4059636
Alignment:
Q  1 tgtctctctgcatcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatcc-ttcttcaactaacttcaatctatgtatttttgtt 99  Q
    |||||| || ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4059418 tgtctcgctacatcttcaacgtcggtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtt 4059517  T
Q  100 ttgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttct 199  Q
    |  |||||| |||||||| |||||||    | |||||||||| |||||||||||| |||||||| |||||| |||||||   ||||| ||||||||||||    
T  4059518 tcaattttcattttgaaattgtttctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgt---cgcgacatcgtaatttct 4059613  T
Q  200 aggtaaatcttctaatctatgtg 222  Q
    |||||||||||||||||| ||||    
T  4059614 aggtaaatcttctaatctctgtg 4059636  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 4059695 - 4059765
Alignment:
Q  280 aattttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtt 350  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  4059695 aattttaattgtaattatcaactttgtgttgaatggtaattttaattgttataggtaaattgattttcgtt 4059765  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 7863633 - 7863572
Alignment:
Q  12 atcttcaacgtctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaa 73  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  7863633 atcttcaacgtctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 33172140 - 33172264
Alignment:
Q  90 tatttttgttttgattttcgttttgaaaatgtttctaagcaactatcgcacagtcgccgagtcgcagtgaaaccgtgttccgtcttcgtcgccgcgaaat 189  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||        ||||||| |||||||||||| ||||||||||||    
T  33172140 tatttttgttttgattttcgttttgaaattgtttctcagcagctatcgcacagtcgccg--------tgaaaccttgttccgtcttcatcgccgcgaaat 33172231  T
Q  190 cgtaatttctaggtaaatcttctaatctatgtg 222  Q
    |||||||||||||||||||||||||||| ||||    
T  33172232 cgtaatttctaggtaaatcttctaatctctgtg 33172264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 33172309 - 33172412
Alignment:
Q  266 gaattgttctatgtaa-ttttaattgtaattatcaactttgtgttgaatcgtaattttaatcgttataggtaaattgattttcgtttttgattttgaatc 364  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  33172309 gaattgttctaggtaaattttaattgtaattatcaactttgtgtagaatcgtaattttaattgttataagtaaattgattttcgtttttgattttgaatc 33172408  T
Q  365 tgtg 368  Q
    ||||    
T  33172409 tgtg 33172412  T

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